NP-MRD: Showing NP-Card for Lucknolide B (NP0009410)

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Record Information

Version

1.0

Created at

2020-12-09 06:48:04 UTC

Updated at

2021-07-15 17:03:11 UTC

NP-MRD ID

NP0009410

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Lucknolide B

Provided By

NPAtlas

Description

Lucknolide B belongs to the class of organic compounds known as furopyrans. These are organic polycyclic compounds containing a furan ring fused to a pyran ring. Furan is a five-membered aromatic ring with four carbon atoms and one oxygen atom. Pyran a six-membered heterocyclic, non-aromatic ring, made up of five carbon atoms and one oxygen atom and containing two double bonds. Lucknolide B is found in Streptomyces sp. It was first documented in 2010 (PMID: 20704312). Based on a literature review very few articles have been published on Lucknolide B.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242106353D          

 31 33  0  0  0  0            999 V2000
   -2.7244    1.2707   -0.9775 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3552   -0.0230   -1.2342 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2766   -0.4793   -0.4705 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7215   -0.4643    0.9701 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8294   -1.3012    1.1016 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0330   -1.8104   -0.8598 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0851   -2.4373   -0.3521 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0746   -3.6495    0.0250 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3250   -1.6697   -0.2487 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8731   -1.5333    1.1151 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3073   -0.2991    1.3187 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1025    0.5295    0.1243 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2712    1.7585    0.3668 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7047    2.7539   -0.5040 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0273    1.4602    0.1072 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0864    0.3610   -0.7459 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2358   -0.2809   -0.7797 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8967    2.0000   -1.1704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1327    1.4860    0.0077 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5326    1.5724   -1.7040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9489    0.5315    1.3385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9205   -0.9703    1.5880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2567   -1.3887    0.2237 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1046   -2.2424   -0.8336 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9178   -2.3203    1.8476 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7652    0.0933    2.2415 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0825    0.7894   -0.3263 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3773    2.1321    1.4173 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0335    3.5556   -0.0195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2450    0.8249   -1.7691 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7267   -0.2492   -1.7979 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  6  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  3  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16  3  1  0  0  0  0
 17  9  1  0  0  0  0
 17 12  1  0  0  0  0
  1 18  1  0  0  0  0
  1 19  1  0  0  0  0
  1 20  1  0  0  0  0
  4 21  1  0  0  0  0
  4 22  1  0  0  0  0
  5 23  1  0  0  0  0
  9 24  1  6  0  0  0
 10 25  1  0  0  0  0
 11 26  1  0  0  0  0
 12 27  1  6  0  0  0
 13 28  1  1  0  0  0
 14 29  1  0  0  0  0
 16 30  1  6  0  0  0
 17 31  1  6  0  0  0
M  END

     RDKit          3D

 31 33  0  0  0  0  0  0  0  0999 V2000
   -2.7244    1.2707   -0.9775 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3552   -0.0230   -1.2342 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2766   -0.4793   -0.4705 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7215   -0.4643    0.9701 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8294   -1.3012    1.1016 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0330   -1.8104   -0.8598 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0851   -2.4373   -0.3521 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0746   -3.6495    0.0250 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3250   -1.6697   -0.2487 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8731   -1.5333    1.1151 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3073   -0.2991    1.3187 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1025    0.5295    0.1243 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2712    1.7585    0.3668 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7047    2.7539   -0.5040 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0273    1.4602    0.1072 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0864    0.3610   -0.7459 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2358   -0.2809   -0.7797 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8967    2.0000   -1.1704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1327    1.4860    0.0077 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5326    1.5724   -1.7040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9489    0.5315    1.3385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9205   -0.9703    1.5880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2567   -1.3887    0.2237 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1046   -2.2424   -0.8336 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9178   -2.3203    1.8476 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7652    0.0933    2.2415 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0825    0.7894   -0.3263 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3773    2.1321    1.4173 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0335    3.5556   -0.0195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2450    0.8249   -1.7691 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7267   -0.2492   -1.7979 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  3  2  1  6
  3  4  1  0
  4  5  1  0
  3  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 16  3  1  0
 17  9  1  0
 17 12  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  4 21  1  0
  4 22  1  0
  5 23  1  0
  9 24  1  6
 10 25  1  0
 11 26  1  0
 12 27  1  6
 13 28  1  1
 14 29  1  0
 16 30  1  6
 17 31  1  6
M  END


  Mrv1652306242106353D          

 31 33  0  0  0  0            999 V2000
   -2.7244    1.2707   -0.9775 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3552   -0.0230   -1.2342 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2766   -0.4793   -0.4705 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7215   -0.4643    0.9701 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8294   -1.3012    1.1016 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0330   -1.8104   -0.8598 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0851   -2.4373   -0.3521 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0746   -3.6495    0.0250 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3250   -1.6697   -0.2487 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8731   -1.5333    1.1151 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3073   -0.2991    1.3187 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1025    0.5295    0.1243 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2712    1.7585    0.3668 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7047    2.7539   -0.5040 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0273    1.4602    0.1072 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0864    0.3610   -0.7459 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2358   -0.2809   -0.7797 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8967    2.0000   -1.1704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1327    1.4860    0.0077 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5326    1.5724   -1.7040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9489    0.5315    1.3385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9205   -0.9703    1.5880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2567   -1.3887    0.2237 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1046   -2.2424   -0.8336 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9178   -2.3203    1.8476 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7652    0.0933    2.2415 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0825    0.7894   -0.3263 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3773    2.1321    1.4173 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0335    3.5556   -0.0195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2450    0.8249   -1.7691 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7267   -0.2492   -1.7979 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  6  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  3  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16  3  1  0  0  0  0
 17  9  1  0  0  0  0
 17 12  1  0  0  0  0
  1 18  1  0  0  0  0
  1 19  1  0  0  0  0
  1 20  1  0  0  0  0
  4 21  1  0  0  0  0
  4 22  1  0  0  0  0
  5 23  1  0  0  0  0
  9 24  1  6  0  0  0
 10 25  1  0  0  0  0
 11 26  1  0  0  0  0
 12 27  1  6  0  0  0
 13 28  1  1  0  0  0
 14 29  1  0  0  0  0
 16 30  1  6  0  0  0
 17 31  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0009410

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])[C@]1(OC([H])([H])[H])OC(=O)[C@]2([H])C([H])=C([H])[C@]3([H])[C@@]([H])(O[H])O[C@@]1([H])[C@]23[H]

> <INCHI_IDENTIFIER>
InChI=1S/C11H14O6/c1-15-11(4-12)8-7-5(9(13)16-8)2-3-6(7)10(14)17-11/h2-3,5-9,12-13H,4H2,1H3/t5-,6+,7-,8-,9-,11-/m0/s1

> <INCHI_KEY>
CJCSOOAROHQPTG-RGJNTOLQSA-N

> <FORMULA>
C11H14O6

> <MOLECULAR_WEIGHT>
242.227

> <EXACT_MASS>
242.079038171

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
31

> <JCHEM_AVERAGE_POLARIZABILITY>
22.578559260403114

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,3S,4S,7R,10S,11S)-3-hydroxy-10-(hydroxymethyl)-10-methoxy-2,9-dioxatricyclo[5.3.1.0^{4,11}]undec-5-en-8-one

> <ALOGPS_LOGP>
-1.02

> <JCHEM_LOGP>
-0.5193727986666667

> <ALOGPS_LOGS>
-0.18

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.506327509378348

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.091607306312818

> <JCHEM_PKA_STRONGEST_BASIC>
-3.4600209688830255

> <JCHEM_POLAR_SURFACE_AREA>
85.22000000000001

> <JCHEM_REFRACTIVITY>
55.38840000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.59e+02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,3S,4S,7R,10S,11S)-3-hydroxy-10-(hydroxymethyl)-10-methoxy-2,9-dioxatricyclo[5.3.1.0^{4,11}]undec-5-en-8-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 31 33  0  0  0  0  0  0  0  0999 V2000
   -2.7244    1.2707   -0.9775 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3552   -0.0230   -1.2342 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2766   -0.4793   -0.4705 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7215   -0.4643    0.9701 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8294   -1.3012    1.1016 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0330   -1.8104   -0.8598 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0851   -2.4373   -0.3521 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0746   -3.6495    0.0250 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3250   -1.6697   -0.2487 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8731   -1.5333    1.1151 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3073   -0.2991    1.3187 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1025    0.5295    0.1243 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2712    1.7585    0.3668 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7047    2.7539   -0.5040 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0273    1.4602    0.1072 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0864    0.3610   -0.7459 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2358   -0.2809   -0.7797 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8967    2.0000   -1.1704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1327    1.4860    0.0077 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5326    1.5724   -1.7040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9489    0.5315    1.3385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9205   -0.9703    1.5880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2567   -1.3887    0.2237 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1046   -2.2424   -0.8336 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9178   -2.3203    1.8476 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7652    0.0933    2.2415 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0825    0.7894   -0.3263 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3773    2.1321    1.4173 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0335    3.5556   -0.0195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2450    0.8249   -1.7691 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7267   -0.2492   -1.7979 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  3  2  1  6
  3  4  1  0
  4  5  1  0
  3  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 16  3  1  0
 17  9  1  0
 17 12  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  4 21  1  0
  4 22  1  0
  5 23  1  0
  9 24  1  6
 10 25  1  0
 11 26  1  0
 12 27  1  6
 13 28  1  1
 14 29  1  0
 16 30  1  6
 17 31  1  6
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -2.724   1.271  -0.978  0.00  0.00           C+0
HETATM    2  O   UNK     0      -2.355  -0.023  -1.234  0.00  0.00           O+0
HETATM    3  C   UNK     0      -1.277  -0.479  -0.471  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.722  -0.464   0.970  0.00  0.00           C+0
HETATM    5  O   UNK     0      -2.829  -1.301   1.102  0.00  0.00           O+0
HETATM    6  O   UNK     0      -1.033  -1.810  -0.860  0.00  0.00           O+0
HETATM    7  C   UNK     0       0.085  -2.437  -0.352  0.00  0.00           C+0
HETATM    8  O   UNK     0       0.075  -3.650   0.025  0.00  0.00           O+0
HETATM    9  C   UNK     0       1.325  -1.670  -0.249  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.873  -1.533   1.115  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.307  -0.299   1.319  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.103   0.530   0.124  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.271   1.759   0.367  0.00  0.00           C+0
HETATM   14  O   UNK     0       1.705   2.754  -0.504  0.00  0.00           O+0
HETATM   15  O   UNK     0      -0.027   1.460   0.107  0.00  0.00           O+0
HETATM   16  C   UNK     0      -0.086   0.361  -0.746  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.236  -0.281  -0.780  0.00  0.00           C+0
HETATM   18  H   UNK     0      -1.897   2.000  -1.170  0.00  0.00           H+0
HETATM   19  H   UNK     0      -3.133   1.486   0.008  0.00  0.00           H+0
HETATM   20  H   UNK     0      -3.533   1.572  -1.704  0.00  0.00           H+0
HETATM   21  H   UNK     0      -1.949   0.532   1.339  0.00  0.00           H+0
HETATM   22  H   UNK     0      -0.921  -0.970   1.588  0.00  0.00           H+0
HETATM   23  H   UNK     0      -3.257  -1.389   0.224  0.00  0.00           H+0
HETATM   24  H   UNK     0       2.105  -2.242  -0.834  0.00  0.00           H+0
HETATM   25  H   UNK     0       1.918  -2.320   1.848  0.00  0.00           H+0
HETATM   26  H   UNK     0       2.765   0.093   2.241  0.00  0.00           H+0
HETATM   27  H   UNK     0       3.083   0.789  -0.326  0.00  0.00           H+0
HETATM   28  H   UNK     0       1.377   2.132   1.417  0.00  0.00           H+0
HETATM   29  H   UNK     0       2.034   3.556  -0.020  0.00  0.00           H+0
HETATM   30  H   UNK     0      -0.245   0.825  -1.769  0.00  0.00           H+0
HETATM   31  H   UNK     0       1.727  -0.249  -1.798  0.00  0.00           H+0
CONECT    1    2   18   19   20                                             
CONECT    2    1    3                                                       
CONECT    3    2    4    6   16                                             
CONECT    4    3    5   21   22                                             
CONECT    5    4   23                                                       
CONECT    6    3    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   17   24                                             
CONECT   10    9   11   25                                                  
CONECT   11   10   12   26                                                  
CONECT   12   11   13   17   27                                             
CONECT   13   12   14   15   28                                             
CONECT   14   13   29                                                       
CONECT   15   13   16                                                       
CONECT   16   15   17    3   30                                             
CONECT   17   16    9   12   31                                             
CONECT   18    1                                                            
CONECT   19    1                                                            
CONECT   20    1                                                            
CONECT   21    4                                                            
CONECT   22    4                                                            
CONECT   23    5                                                            
CONECT   24    9                                                            
CONECT   25   10                                                            
CONECT   26   11                                                            
CONECT   27   12                                                            
CONECT   28   13                                                            
CONECT   29   14                                                            
CONECT   30   16                                                            
CONECT   31   17                                                            
MASTER        0    0    0    0    0    0    0    0   31    0   66    0
END

RDKit          3D

31 33  0  0  0  0  0  0  0  0999 V2000
   -2.7244    1.2707   -0.9775 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3552   -0.0230   -1.2342 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2766   -0.4793   -0.4705 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7215   -0.4643    0.9701 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8294   -1.3012    1.1016 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0330   -1.8104   -0.8598 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0851   -2.4373   -0.3521 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0746   -3.6495    0.0250 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3250   -1.6697   -0.2487 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8731   -1.5333    1.1151 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3073   -0.2991    1.3187 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1025    0.5295    0.1243 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2712    1.7585    0.3668 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7047    2.7539   -0.5040 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0273    1.4602    0.1072 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0864    0.3610   -0.7459 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2358   -0.2809   -0.7797 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8967    2.0000   -1.1704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1327    1.4860    0.0077 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5326    1.5724   -1.7040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9489    0.5315    1.3385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9205   -0.9703    1.5880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2567   -1.3887    0.2237 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1046   -2.2424   -0.8336 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9178   -2.3203    1.8476 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7652    0.0933    2.2415 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0825    0.7894   -0.3263 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3773    2.1321    1.4173 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0335    3.5556   -0.0195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2450    0.8249   -1.7691 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7267   -0.2492   -1.7979 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  3  2  1  6
  3  4  1  0
  4  5  1  0
  3  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 16  3  1  0
 17  9  1  0
 17 12  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  4 21  1  0
  4 22  1  0
  5 23  1  0
  9 24  1  6
 10 25  1  0
 11 26  1  0
 12 27  1  6
 13 28  1  1
 14 29  1  0
 16 30  1  6
 17 31  1  6
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₁₁H₁₄O₆

Average Mass

242.2270 Da

Monoisotopic Mass

242.07904 Da

IUPAC Name

(1S,3S,4S,7R,10S,11S)-3-hydroxy-10-(hydroxymethyl)-10-methoxy-2,9-dioxatricyclo[5.3.1.0^{4,11}]undec-5-en-8-one

Traditional Name

(1S,3S,4S,7R,10S,11S)-3-hydroxy-10-(hydroxymethyl)-10-methoxy-2,9-dioxatricyclo[5.3.1.0^{4,11}]undec-5-en-8-one

CAS Registry Number

Not Available

SMILES

CO[C@@]1(CO)OC(=O)[C@@H]2C=C[C@@H]3[C@@H](O)O[C@H]1[C@H]23

InChI Identifier

InChI=1S/C11H14O6/c1-15-11(4-12)8-7-5(9(13)16-8)2-3-6(7)10(14)17-11/h2-3,5-9,12-13H,4H2,1H3/t5-,6+,7-,8-,9-,11-/m0/s1

InChI Key

CJCSOOAROHQPTG-RGJNTOLQSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces sp.	NPAtlas	20704312

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as furopyrans. These are organic polycyclic compounds containing a furan ring fused to a pyran ring. Furan is a five-membered aromatic ring with four carbon atoms and one oxygen atom. Pyran a six-membered heterocyclic, non-aromatic ring, made up of five carbon atoms and one oxygen atom and containing two double bonds.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Furopyrans

Sub Class

Not Available

Direct Parent

Furopyrans

Alternative Parents

Substituents

Furopyran
Delta valerolactone
Ketal
Delta_valerolactone
Pyran
Oxane
Furan
Oxolane
Carboxylic acid ester
Hemiacetal
Lactone
Oxacycle
Acetal
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Alcohol
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Carbonyl group
Organooxygen compound
Primary alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1	ALOGPS
logP	-0.52	ChemAxon
logS	-0.18	ALOGPS
pKa (Strongest Acidic)	12.09	ChemAxon
pKa (Strongest Basic)	-3.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	85.22 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	55.39 m³·mol⁻¹	ChemAxon
Polarizability	22.58 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA013363

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78437860

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

46933684

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Yadav PP, Nair V, Dittrich B, Schuffler A, Laatsch H: Lucknolides A and B, tricyclic ketal-lactone metabolites from a terrestrial Streptomyces sp. Org Lett. 2010 Sep 3;12(17):3800-3. doi: 10.1021/ol1014703. [PubMed:20704312 ]

Showing NP-Card for Lucknolide B (NP0009410)

MOL for NP0009410 (Lucknolide B)

3D MOL for NP0009410 (Lucknolide B)

3D SDF for NP0009410 (Lucknolide B)

3D-SDF for NP0009410 (Lucknolide B)

PDB for NP0009410 (Lucknolide B)

3D PDB for NP0009410 (Lucknolide B)

SMILES for NP0009410 (Lucknolide B)

INCHI for NP0009410 (Lucknolide B)

Structure for NP0009410 (Lucknolide B)

3D Structure for NP0009410 (Lucknolide B)