NP-MRD: Showing NP-Card for Cinnabaramide D (NP0006840)

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Record Information

Version

1.0

Created at

2020-12-09 03:45:45 UTC

Updated at

2021-07-15 16:55:56 UTC

NP-MRD ID

NP0006840

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Cinnabaramide D

Provided By

NPAtlas

Description

Cinnabaramide D is found in Streptomyces sp. It was first documented in 2007 (PMID: 17249727). Based on a literature review very few articles have been published on (2R,3S,4R)-2-[(S)-[(1S)-cyclohex-2-en-1-yl](hydroxy)methyl]-3,5-dihydroxy-4-(1-hydroxyhexyl)-3-methyl-3,4-dihydro-2H-pyrrole-2-carboxylic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118353D          

 57 58  0  0  0  0            999 V2000
    4.8577    1.1671   -1.8470 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8295    0.0642   -1.5591 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.5619   -0.7220   -0.3251 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3208   -1.5017   -0.2272 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0110   -0.8132   -0.2950 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8495   -1.8003   -0.1368 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8708   -2.4739    1.0528 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5574   -1.0488   -0.4074 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5336   -2.0441   -0.2427 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7402   -3.0580   -0.9541 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3364   -1.6748    0.8703 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2689   -0.2090    0.9127 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5595    0.3091    2.2438 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7786   -0.4439    3.2492 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6132    1.6629    2.4979 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0824    0.3355   -0.1897 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5597   -0.0885   -1.4362 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4910   -0.1829   -0.1793 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2578    0.3629   -1.3585 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1739    1.2917   -1.2874 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6092    1.9606   -0.0366 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.5994    1.6725    1.0639 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3092    0.1767    1.0203 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2408   -0.0394    0.6224 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5873    1.3721    0.2814 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8698   -0.3801    1.8364 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3940    2.1310   -2.0897 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2626    1.4145   -0.9507 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1998    0.8799   -2.6844 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8473    0.5619   -1.4680 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8915   -0.6013   -2.4739 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7030   -0.0023    0.5322 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4160   -1.4536   -0.2021 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3787   -2.3025   -1.0424 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2982   -2.1496    0.7101 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9474    0.0041    0.4194 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8517   -0.4026   -1.3209 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.5205   -2.1466    1.7157 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6612   -0.6649   -1.4401 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.0785   -0.8250   -1.8254 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5103   -1.2975   -0.2690 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.6380    1.6647    0.2517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6118    3.0573   -0.1865 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.7139    2.3007    0.9513 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0320   -0.2572    1.9643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3406   -0.2747    0.7972 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.2516    2.0922    0.4338 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9325    1.5066   -0.7644 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3562   -1.1331    2.2232 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 12 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 12 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  1  0  0  0
 24  8  1  0  0  0  0
 23 18  1  0  0  0  0
  1 27  1  0  0  0  0
  1 28  1  0  0  0  0
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  4 35  1  0  0  0  0
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  6 38  1  6  0  0  0
  7 39  1  0  0  0  0
  8 40  1  6  0  0  0
 11 41  1  0  0  0  0
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 25 55  1  0  0  0  0
 25 56  1  0  0  0  0
 26 57  1  0  0  0  0
M  END

     RDKit          3D

 57 58  0  0  0  0  0  0  0  0999 V2000
    4.8577    1.1671   -1.8470 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8295    0.0642   -1.5591 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.0110   -0.8132   -0.2950 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8495   -1.8003   -0.1368 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8708   -2.4739    1.0528 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5574   -1.0488   -0.4074 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5336   -2.0441   -0.2427 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7402   -3.0580   -0.9541 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.2689   -0.2090    0.9127 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5595    0.3091    2.2438 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652306242118353D          

 57 58  0  0  0  0            999 V2000
    4.8577    1.1671   -1.8470 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8295    0.0642   -1.5591 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.5619   -0.7220   -0.3251 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3208   -1.5017   -0.2272 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0110   -0.8132   -0.2950 C   0  0  1  0  0  0  0  0  0  0  0  0
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    6.4160   -1.4536   -0.2021 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3787   -2.3025   -1.0424 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2982   -2.1496    0.7101 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9474    0.0041    0.4194 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8517   -0.4026   -1.3209 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9673   -2.5342   -0.9597 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5205   -2.1466    1.7157 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6612   -0.6649   -1.4401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8694   -2.2768    1.5321 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7552    2.1188    2.7929 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0570    1.4543   -0.2595 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0785   -0.8250   -1.8254 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5103   -1.2975   -0.2690 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0261   -0.0507   -2.3347 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7036    1.6492   -2.2071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6380    1.6647    0.2517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6118    3.0573   -0.1865 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0867    1.8853    2.0245 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7139    2.3007    0.9513 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0320   -0.2572    1.9643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3406   -0.2747    0.7972 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4034    1.7574    0.9606 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2516    2.0922    0.4338 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9325    1.5066   -0.7644 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3562   -1.1331    2.2232 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 12 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 12 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  1  0  0  0
 24  8  1  0  0  0  0
 23 18  1  0  0  0  0
  1 27  1  0  0  0  0
  1 28  1  0  0  0  0
  1 29  1  0  0  0  0
  2 30  1  0  0  0  0
  2 31  1  0  0  0  0
  3 32  1  0  0  0  0
  3 33  1  0  0  0  0
  4 34  1  0  0  0  0
  4 35  1  0  0  0  0
  5 36  1  0  0  0  0
  5 37  1  0  0  0  0
  6 38  1  6  0  0  0
  7 39  1  0  0  0  0
  8 40  1  6  0  0  0
 11 41  1  0  0  0  0
 15 42  1  0  0  0  0
 16 43  1  6  0  0  0
 17 44  1  0  0  0  0
 18 45  1  6  0  0  0
 19 46  1  0  0  0  0
 20 47  1  0  0  0  0
 21 48  1  0  0  0  0
 21 49  1  0  0  0  0
 22 50  1  0  0  0  0
 22 51  1  0  0  0  0
 23 52  1  0  0  0  0
 23 53  1  0  0  0  0
 25 54  1  0  0  0  0
 25 55  1  0  0  0  0
 25 56  1  0  0  0  0
 26 57  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0006840

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)[C@@]1(N([H])C(=O)[C@]([H])([C@]([H])(O[H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H])[C@@]1(O[H])C([H])([H])[H])[C@@]([H])(O[H])[C@]1([H])C([H])=C([H])C([H])([H])C([H])([H])C1([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C19H31NO6/c1-3-4-6-11-13(21)14-16(23)20-19(17(24)25,18(14,2)26)15(22)12-9-7-5-8-10-12/h7,9,12-15,21-22,26H,3-6,8,10-11H2,1-2H3,(H,20,23)(H,24,25)/t12-,13-,14+,15+,18+,19+/m1/s1

> <INCHI_KEY>
HZMVPYGKRJDSSJ-MOEJHERCSA-N

> <FORMULA>
C19H31NO6

> <MOLECULAR_WEIGHT>
369.458

> <EXACT_MASS>
369.215137722

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
57

> <JCHEM_AVERAGE_POLARIZABILITY>
39.100254092866365

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2R,3S,4R)-2-[(S)-[(1S)-cyclohex-2-en-1-yl](hydroxy)methyl]-3-hydroxy-4-[(1R)-1-hydroxyhexyl]-3-methyl-5-oxopyrrolidine-2-carboxylic acid

> <ALOGPS_LOGP>
1.49

> <JCHEM_LOGP>
1.204913956333334

> <ALOGPS_LOGS>
-2.31

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
11.116666485222899

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.79800594196332

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9525291251886587

> <JCHEM_POLAR_SURFACE_AREA>
127.09000000000002

> <JCHEM_REFRACTIVITY>
95.8173

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.80e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3S,4R)-2-[(S)-(1S)-cyclohex-2-en-1-yl(hydroxy)methyl]-3-hydroxy-4-[(1R)-1-hydroxyhexyl]-3-methyl-5-oxopyrrolidine-2-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 57 58  0  0  0  0  0  0  0  0999 V2000
    4.8577    1.1671   -1.8470 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8295    0.0642   -1.5591 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5619   -0.7220   -0.3251 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3208   -1.5017   -0.2272 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0110   -0.8132   -0.2950 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8495   -1.8003   -0.1368 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8708   -2.4739    1.0528 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5574   -1.0488   -0.4074 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5336   -2.0441   -0.2427 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7402   -3.0580   -0.9541 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3364   -1.6748    0.8703 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2689   -0.2090    0.9127 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5595    0.3091    2.2438 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7786   -0.4439    3.2492 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6132    1.6629    2.4979 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0824    0.3355   -0.1897 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5597   -0.0885   -1.4362 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4910   -0.1829   -0.1793 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2578    0.3629   -1.3585 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1739    1.2917   -1.2874 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6092    1.9606   -0.0366 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5994    1.6725    1.0639 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3092    0.1767    1.0203 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2408   -0.0394    0.6224 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5873    1.3721    0.2814 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8698   -0.3801    1.8364 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3940    2.1310   -2.0897 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2626    1.4145   -0.9507 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1998    0.8799   -2.6844 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8473    0.5619   -1.4680 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8915   -0.6013   -2.4739 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7030   -0.0023    0.5322 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4160   -1.4536   -0.2021 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3787   -2.3025   -1.0424 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2982   -2.1496    0.7101 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9474    0.0041    0.4194 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8517   -0.4026   -1.3209 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9673   -2.5342   -0.9597 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5205   -2.1466    1.7157 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6612   -0.6649   -1.4401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8694   -2.2768    1.5321 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7552    2.1188    2.7929 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0570    1.4543   -0.2595 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0785   -0.8250   -1.8254 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5103   -1.2975   -0.2690 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0261   -0.0507   -2.3347 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7036    1.6492   -2.2071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6380    1.6647    0.2517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6118    3.0573   -0.1865 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0867    1.8853    2.0245 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7139    2.3007    0.9513 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0320   -0.2572    1.9643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3406   -0.2747    0.7972 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4034    1.7574    0.9606 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2516    2.0922    0.4338 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9325    1.5066   -0.7644 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3562   -1.1331    2.2232 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 12 13  1  1
 13 14  2  0
 13 15  1  0
 12 16  1  0
 16 17  1  0
 16 18  1  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 12 24  1  0
 24 25  1  0
 24 26  1  1
 24  8  1  0
 23 18  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  2 30  1  0
  2 31  1  0
  3 32  1  0
  3 33  1  0
  4 34  1  0
  4 35  1  0
  5 36  1  0
  5 37  1  0
  6 38  1  6
  7 39  1  0
  8 40  1  6
 11 41  1  0
 15 42  1  0
 16 43  1  6
 17 44  1  0
 18 45  1  6
 19 46  1  0
 20 47  1  0
 21 48  1  0
 21 49  1  0
 22 50  1  0
 22 51  1  0
 23 52  1  0
 23 53  1  0
 25 54  1  0
 25 55  1  0
 25 56  1  0
 26 57  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       4.858   1.167  -1.847  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.830   0.064  -1.559  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.562  -0.722  -0.325  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.321  -1.502  -0.227  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.011  -0.813  -0.295  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.849  -1.800  -0.137  0.00  0.00           C+0
HETATM    7  O   UNK     0       1.871  -2.474   1.053  0.00  0.00           O+0
HETATM    8  C   UNK     0       0.557  -1.049  -0.407  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.534  -2.044  -0.243  0.00  0.00           C+0
HETATM   10  O   UNK     0      -0.740  -3.058  -0.954  0.00  0.00           O+0
HETATM   11  N   UNK     0      -1.336  -1.675   0.870  0.00  0.00           N+0
HETATM   12  C   UNK     0      -1.269  -0.209   0.913  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.560   0.309   2.244  0.00  0.00           C+0
HETATM   14  O   UNK     0      -1.779  -0.444   3.249  0.00  0.00           O+0
HETATM   15  O   UNK     0      -1.613   1.663   2.498  0.00  0.00           O+0
HETATM   16  C   UNK     0      -2.082   0.336  -0.190  0.00  0.00           C+0
HETATM   17  O   UNK     0      -1.560  -0.089  -1.436  0.00  0.00           O+0
HETATM   18  C   UNK     0      -3.491  -0.183  -0.179  0.00  0.00           C+0
HETATM   19  C   UNK     0      -4.258   0.363  -1.359  0.00  0.00           C+0
HETATM   20  C   UNK     0      -5.174   1.292  -1.287  0.00  0.00           C+0
HETATM   21  C   UNK     0      -5.609   1.961  -0.037  0.00  0.00           C+0
HETATM   22  C   UNK     0      -4.599   1.673   1.064  0.00  0.00           C+0
HETATM   23  C   UNK     0      -4.309   0.177   1.020  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.241  -0.039   0.622  0.00  0.00           C+0
HETATM   25  C   UNK     0       0.587   1.372   0.281  0.00  0.00           C+0
HETATM   26  O   UNK     0       0.870  -0.380   1.836  0.00  0.00           O+0
HETATM   27  H   UNK     0       5.394   2.131  -2.090  0.00  0.00           H+0
HETATM   28  H   UNK     0       4.263   1.415  -0.951  0.00  0.00           H+0
HETATM   29  H   UNK     0       4.200   0.880  -2.684  0.00  0.00           H+0
HETATM   30  H   UNK     0       6.847   0.562  -1.468  0.00  0.00           H+0
HETATM   31  H   UNK     0       5.891  -0.601  -2.474  0.00  0.00           H+0
HETATM   32  H   UNK     0       5.703  -0.002   0.532  0.00  0.00           H+0
HETATM   33  H   UNK     0       6.416  -1.454  -0.202  0.00  0.00           H+0
HETATM   34  H   UNK     0       4.379  -2.303  -1.042  0.00  0.00           H+0
HETATM   35  H   UNK     0       4.298  -2.150   0.710  0.00  0.00           H+0
HETATM   36  H   UNK     0       2.947   0.004   0.419  0.00  0.00           H+0
HETATM   37  H   UNK     0       2.852  -0.403  -1.321  0.00  0.00           H+0
HETATM   38  H   UNK     0       1.967  -2.534  -0.960  0.00  0.00           H+0
HETATM   39  H   UNK     0       2.521  -2.147   1.716  0.00  0.00           H+0
HETATM   40  H   UNK     0       0.661  -0.665  -1.440  0.00  0.00           H+0
HETATM   41  H   UNK     0      -1.869  -2.277   1.532  0.00  0.00           H+0
HETATM   42  H   UNK     0      -0.755   2.119   2.793  0.00  0.00           H+0
HETATM   43  H   UNK     0      -2.057   1.454  -0.260  0.00  0.00           H+0
HETATM   44  H   UNK     0      -2.079  -0.825  -1.825  0.00  0.00           H+0
HETATM   45  H   UNK     0      -3.510  -1.298  -0.269  0.00  0.00           H+0
HETATM   46  H   UNK     0      -4.026  -0.051  -2.335  0.00  0.00           H+0
HETATM   47  H   UNK     0      -5.704   1.649  -2.207  0.00  0.00           H+0
HETATM   48  H   UNK     0      -6.638   1.665   0.252  0.00  0.00           H+0
HETATM   49  H   UNK     0      -5.612   3.057  -0.187  0.00  0.00           H+0
HETATM   50  H   UNK     0      -5.087   1.885   2.025  0.00  0.00           H+0
HETATM   51  H   UNK     0      -3.714   2.301   0.951  0.00  0.00           H+0
HETATM   52  H   UNK     0      -4.032  -0.257   1.964  0.00  0.00           H+0
HETATM   53  H   UNK     0      -5.341  -0.275   0.797  0.00  0.00           H+0
HETATM   54  H   UNK     0       1.403   1.757   0.961  0.00  0.00           H+0
HETATM   55  H   UNK     0      -0.252   2.092   0.434  0.00  0.00           H+0
HETATM   56  H   UNK     0       0.933   1.507  -0.764  0.00  0.00           H+0
HETATM   57  H   UNK     0       0.356  -1.133   2.223  0.00  0.00           H+0
CONECT    1    2   27   28   29                                             
CONECT    2    1    3   30   31                                             
CONECT    3    2    4   32   33                                             
CONECT    4    3    5   34   35                                             
CONECT    5    4    6   36   37                                             
CONECT    6    5    7    8   38                                             
CONECT    7    6   39                                                       
CONECT    8    6    9   24   40                                             
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   41                                                  
CONECT   12   11   13   16   24                                             
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   42                                                       
CONECT   16   12   17   18   43                                             
CONECT   17   16   44                                                       
CONECT   18   16   19   23   45                                             
CONECT   19   18   20   46                                                  
CONECT   20   19   21   47                                                  
CONECT   21   20   22   48   49                                             
CONECT   22   21   23   50   51                                             
CONECT   23   22   18   52   53                                             
CONECT   24   12   25   26    8                                             
CONECT   25   24   54   55   56                                             
CONECT   26   24   57                                                       
CONECT   27    1                                                            
CONECT   28    1                                                            
CONECT   29    1                                                            
CONECT   30    2                                                            
CONECT   31    2                                                            
CONECT   32    3                                                            
CONECT   33    3                                                            
CONECT   34    4                                                            
CONECT   35    4                                                            
CONECT   36    5                                                            
CONECT   37    5                                                            
CONECT   38    6                                                            
CONECT   39    7                                                            
CONECT   40    8                                                            
CONECT   41   11                                                            
CONECT   42   15                                                            
CONECT   43   16                                                            
CONECT   44   17                                                            
CONECT   45   18                                                            
CONECT   46   19                                                            
CONECT   47   20                                                            
CONECT   48   21                                                            
CONECT   49   21                                                            
CONECT   50   22                                                            
CONECT   51   22                                                            
CONECT   52   23                                                            
CONECT   53   23                                                            
CONECT   54   25                                                            
CONECT   55   25                                                            
CONECT   56   25                                                            
CONECT   57   26                                                            
MASTER        0    0    0    0    0    0    0    0   57    0  116    0
END

RDKit          3D

57 58  0  0  0  0  0  0  0  0999 V2000
    4.8577    1.1671   -1.8470 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8295    0.0642   -1.5591 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5619   -0.7220   -0.3251 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3208   -1.5017   -0.2272 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0110   -0.8132   -0.2950 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8495   -1.8003   -0.1368 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8708   -2.4739    1.0528 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5574   -1.0488   -0.4074 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5336   -2.0441   -0.2427 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7402   -3.0580   -0.9541 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3364   -1.6748    0.8703 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2689   -0.2090    0.9127 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5595    0.3091    2.2438 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7786   -0.4439    3.2492 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.2578    0.3629   -1.3585 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1739    1.2917   -1.2874 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6092    1.9606   -0.0366 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5994    1.6725    1.0639 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3092    0.1767    1.0203 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2408   -0.0394    0.6224 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5873    1.3721    0.2814 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8698   -0.3801    1.8364 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3940    2.1310   -2.0897 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2626    1.4145   -0.9507 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1998    0.8799   -2.6844 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8473    0.5619   -1.4680 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8915   -0.6013   -2.4739 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7030   -0.0023    0.5322 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4160   -1.4536   -0.2021 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3787   -2.3025   -1.0424 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2982   -2.1496    0.7101 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9474    0.0041    0.4194 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8517   -0.4026   -1.3209 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9673   -2.5342   -0.9597 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5205   -2.1466    1.7157 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6612   -0.6649   -1.4401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8694   -2.2768    1.5321 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7552    2.1188    2.7929 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0570    1.4543   -0.2595 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0785   -0.8250   -1.8254 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5103   -1.2975   -0.2690 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0261   -0.0507   -2.3347 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7036    1.6492   -2.2071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6380    1.6647    0.2517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6118    3.0573   -0.1865 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0867    1.8853    2.0245 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7139    2.3007    0.9513 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0320   -0.2572    1.9643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3406   -0.2747    0.7972 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4034    1.7574    0.9606 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2516    2.0922    0.4338 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9325    1.5066   -0.7644 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3562   -1.1331    2.2232 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 12 13  1  1
 13 14  2  0
 13 15  1  0
 12 16  1  0
 16 17  1  0
 16 18  1  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 12 24  1  0
 24 25  1  0
 24 26  1  1
 24  8  1  0
 23 18  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  2 30  1  0
  2 31  1  0
  3 32  1  0
  3 33  1  0
  4 34  1  0
  4 35  1  0
  5 36  1  0
  5 37  1  0
  6 38  1  6
  7 39  1  0
  8 40  1  6
 11 41  1  0
 15 42  1  0
 16 43  1  6
 17 44  1  0
 18 45  1  6
 19 46  1  0
 20 47  1  0
 21 48  1  0
 21 49  1  0
 22 50  1  0
 22 51  1  0
 23 52  1  0
 23 53  1  0
 25 54  1  0
 25 55  1  0
 25 56  1  0
 26 57  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
(2R,3S,4R)-2-[(S)-[(1S)-Cyclohex-2-en-1-yl](hydroxy)methyl]-3,5-dihydroxy-4-(1-hydroxyhexyl)-3-methyl-3,4-dihydro-2H-pyrrole-2-carboxylate	Generator

Chemical Formula

C₁₉H₃₁NO₆

Average Mass

369.4580 Da

Monoisotopic Mass

369.21514 Da

IUPAC Name

(2R,3S,4R)-2-[(S)-[(1S)-cyclohex-2-en-1-yl](hydroxy)methyl]-3-hydroxy-4-[(1R)-1-hydroxyhexyl]-3-methyl-5-oxopyrrolidine-2-carboxylic acid

Traditional Name

(2R,3S,4R)-2-[(S)-(1S)-cyclohex-2-en-1-yl(hydroxy)methyl]-3-hydroxy-4-[(1R)-1-hydroxyhexyl]-3-methyl-5-oxopyrrolidine-2-carboxylic acid

CAS Registry Number

Not Available

SMILES

CCCCCC(O)[C@H]1C(=O)N[C@@]([C@@H](O)[C@H]2CCCC=C2)(C(O)=O)[C@@]1(C)O

InChI Identifier

InChI=1S/C19H31NO6/c1-3-4-6-11-13(21)14-16(23)20-19(17(24)25,18(14,2)26)15(22)12-9-7-5-8-10-12/h7,9,12-15,21-22,26H,3-6,8,10-11H2,1-2H3,(H,20,23)(H,24,25)/t12-,13?,14+,15+,18+,19+/m1/s1

InChI Key

HZMVPYGKRJDSSJ-MOEJHERCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces sp.	NPAtlas	17249727

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.49	ALOGPS
logP	1.2	ChemAxon
logS	-2.3	ALOGPS
pKa (Strongest Acidic)	3.8	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	127.09 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	95.82 m³·mol⁻¹	ChemAxon
Polarizability	39.1 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA013041

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

17214466

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

16109812

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Stadler M, Bitzer J, Mayer-Bartschmid A, Muller H, Benet-Buchholz J, Gantner F, Tichy HV, Reinemer P, Bacon KB: Cinnabaramides A-G: analogues of lactacystin and salinosporamide from a terrestrial streptomycete. J Nat Prod. 2007 Feb;70(2):246-52. doi: 10.1021/np060162u. Epub 2007 Jan 24. [PubMed:17249727 ]

Showing NP-Card for Cinnabaramide D (NP0006840)

MOL for NP0006840 (Cinnabaramide D)

3D MOL for NP0006840 (Cinnabaramide D)

3D SDF for NP0006840 (Cinnabaramide D)

3D-SDF for NP0006840 (Cinnabaramide D)

PDB for NP0006840 (Cinnabaramide D)

3D PDB for NP0006840 (Cinnabaramide D)

SMILES for NP0006840 (Cinnabaramide D)

INCHI for NP0006840 (Cinnabaramide D)

Structure for NP0006840 (Cinnabaramide D)

3D Structure for NP0006840 (Cinnabaramide D)