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Record Information
Version2.0
Created at2020-12-09 03:21:20 UTC
Updated at2021-07-15 16:54:24 UTC
NP-MRD IDNP0006299
Secondary Accession NumbersNone
Natural Product Identification
Common NameMycosporine-2-glycine
Provided ByNPAtlasNPAtlas Logo
Description2-({3-[(Carboxymethyl)amino]-5-hydroxy-5-(hydroxymethyl)-2-methoxycyclohex-2-en-1-ylidene}amino)acetic acid belongs to the class of organic compounds known as alpha amino acids. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon). Mycosporine-2-glycine is found in Cyanobacterium. Mycosporine-2-glycine was first documented in 2002 (PMID: 11959442). Based on a literature review very few articles have been published on 2-({3-[(carboxymethyl)amino]-5-hydroxy-5-(hydroxymethyl)-2-methoxycyclohex-2-en-1-ylidene}amino)acetic acid (PMID: 16630254) (PMID: 31164584) (PMID: 31132117) (PMID: 31013795) (PMID: 30502329) (PMID: 29947423).
Structure
Data?1624571230
Synonyms
ValueSource
2-({3-[(carboxymethyl)amino]-5-hydroxy-5-(hydroxymethyl)-2-methoxycyclohex-2-en-1-ylidene}amino)acetateGenerator
Chemical FormulaC12H18N2O7
Average Mass302.2830 Da
Monoisotopic Mass302.11140 Da
IUPAC Name2-{[(3E,5S)-3-[(carboxymethyl)imino]-5-hydroxy-5-(hydroxymethyl)-2-methoxycyclohex-1-en-1-yl]amino}acetic acid
Traditional Name{[(3E,5S)-3-[(carboxymethyl)imino]-5-hydroxy-5-(hydroxymethyl)-2-methoxycyclohex-1-en-1-yl]amino}acetic acid
CAS Registry NumberNot Available
SMILES
COC1=C(CC(O)(CO)CC1=NCC(O)=O)NCC(O)=O
InChI Identifier
InChI=1S/C12H18N2O7/c1-21-11-7(13-4-9(16)17)2-12(20,6-15)3-8(11)14-5-10(18)19/h13,15,20H,2-6H2,1H3,(H,16,17)(H,18,19)
InChI KeyNCZZDMCBYGVEGP-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
CyanobacteriumNPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as alpha amino acids. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon).
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentAlpha amino acids
Alternative Parents
Substituents
  • Alpha-amino acid
  • Dicarboxylic acid or derivatives
  • Azomethine
  • Tertiary alcohol
  • Secondary ketimine
  • 1,2-diol
  • Amino acid
  • Ketimine
  • Carboxylic acid
  • Secondary aliphatic amine
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Secondary amine
  • Enamine
  • Organic nitrogen compound
  • Organonitrogen compound
  • Imine
  • Organooxygen compound
  • Primary alcohol
  • Hydrocarbon derivative
  • Organic oxide
  • Carbonyl group
  • Organopnictogen compound
  • Amine
  • Organic oxygen compound
  • Alcohol
  • Aliphatic homomonocyclic compound
Molecular FrameworkAliphatic homomonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-1.1ALOGPS
logP-5.4ChemAxon
logS-2.2ALOGPS
pKa (Strongest Acidic)1.76ChemAxon
pKa (Strongest Basic)6.66ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count9ChemAxon
Hydrogen Donor Count5ChemAxon
Polar Surface Area148.68 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity71.31 m³·mol⁻¹ChemAxon
Polarizability29.28 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA014361
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound23427657
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Volkmann M, Gorbushina AA, Kedar L, Oren A: Structure of euhalothece-362, a novel red-shifted mycosporine-like amino acid, from a halophilic cyanobacterium (Euhalothece sp.). FEMS Microbiol Lett. 2006 May;258(1):50-4. doi: 10.1111/j.1574-6968.2006.00203.x. [PubMed:16630254 ]
  2. Ngoennet S, Nishikawa Y, Hibino T, Waditee-Sirisattha R, Kageyama H: A Method for the Isolation and Characterization of Mycosporine-Like Amino Acids from Cyanobacteria. Methods Protoc. 2018 Dec 3;1(4). pii: mps1040046. doi: 10.3390/mps1040046. [PubMed:31164584 ]
  3. Pingkhanont P, Tarasuntisuk S, Hibino T, Kageyama H, Waditee-Sirisattha R: Expression of a stress-responsive gene cluster for mycosporine-2-glycine confers oxidative stress tolerance in Synechococcus elongatus PCC7942. FEMS Microbiol Lett. 2019 May 1;366(9). pii: 5499022. doi: 10.1093/femsle/fnz115. [PubMed:31132117 ]
  4. Kageyama H, Waditee-Sirisattha R: Antioxidative, Anti-Inflammatory, and Anti-Aging Properties of Mycosporine-Like Amino Acids: Molecular and Cellular Mechanisms in the Protection of Skin-Aging. Mar Drugs. 2019 Apr 12;17(4). pii: md17040222. doi: 10.3390/md17040222. [PubMed:31013795 ]
  5. Tarasuntisuk S, Palaga T, Kageyama H, Waditee-Sirisattha R: Mycosporine-2-glycine exerts anti-inflammatory and antioxidant effects in lipopolysaccharide (LPS)-stimulated RAW 264.7 macrophages. Arch Biochem Biophys. 2019 Feb 15;662:33-39. doi: 10.1016/j.abb.2018.11.026. Epub 2018 Nov 28. [PubMed:30502329 ]
  6. Tarasuntisuk S, Patipong T, Hibino T, Waditee-Sirisattha R, Kageyama H: Inhibitory effects of mycosporine-2-glycine isolated from a halotolerant cyanobacterium on protein glycation and collagenase activity. Lett Appl Microbiol. 2018 Sep;67(3):314-320. doi: 10.1111/lam.13041. Epub 2018 Jul 17. [PubMed:29947423 ]
  7. Cheewinthamrongrod V, Kageyama H, Palaga T, Takabe T, Waditee-Sirisattha R: DNA damage protecting and free radical scavenging properties of mycosporine-2-glycine from the Dead Sea cyanobacterium in A375 human melanoma cell lines. J Photochem Photobiol B. 2016 Nov;164:289-295. doi: 10.1016/j.jphotobiol.2016.09.037. Epub 2016 Sep 29. [PubMed:27718421 ]
  8. Waditee-Sirisattha R, Kageyama H, Fukaya M, Rai V, Takabe T: Nitrate and amino acid availability affects glycine betaine and mycosporine-2-glycine in response to changes of salinity in a halotolerant cyanobacterium Aphanothece halophytica. FEMS Microbiol Lett. 2015 Dec;362(23):fnv198. doi: 10.1093/femsle/fnv198. Epub 2015 Oct 15. [PubMed:26474598 ]
  9. Waditee-Sirisattha R, Kageyama H, Sopun W, Tanaka Y, Takabe T: Identification and upregulation of biosynthetic genes required for accumulation of Mycosporine-2-glycine under salt stress conditions in the halotolerant cyanobacterium Aphanothece halophytica. Appl Environ Microbiol. 2014 Mar;80(5):1763-9. doi: 10.1128/AEM.03729-13. Epub 2013 Dec 27. [PubMed:24375141 ]
  10. Gao Q, Garcia-Pichel F: An ATP-grasp ligase involved in the last biosynthetic step of the iminomycosporine shinorine in Nostoc punctiforme ATCC 29133. J Bacteriol. 2011 Nov;193(21):5923-8. doi: 10.1128/JB.05730-11. Epub 2011 Sep 2. [PubMed:21890703 ]
  11. Sommaruga R, Whitehead K, Shick JM, Lobban CS: Mycosporine-like amino acids in the zooxanthella-ciliate symbiosis Maristentor dinoferus. Protist. 2006 Jun;157(2):185-91. doi: 10.1016/j.protis.2006.01.002. Epub 2006 Apr 19. [PubMed:16621697 ]
  12. Przeslawski R, Benkendorff K, Davis AR: A quantitative survey of mycosporine-like amino acids (MAAS) in intertidal egg masses from temperate rocky shores. J Chem Ecol. 2005 Oct;31(10):2417-38. doi: 10.1007/s10886-005-7110-3. Epub 2005 Sep 28. [PubMed:16195852 ]
  13. Montero O, Lubian LM: Mycosporine-like amino acid (MAAs) production by Heterocapasa sp. (Dinophyceae) in indoor cultures. Biomol Eng. 2003 Jul;20(4-6):183-9. doi: 10.1016/s1389-0344(03)00050-9. [PubMed:12919796 ]
  14. Kedar L, Kashman Y, Oren A: Mycosporine-2-glycine is the major mycosporine-like amino acid in a unicellular cyanobacterium (Euhalothece sp.) isolated from a gypsum crust in a hypersaline saltern pond. FEMS Microbiol Lett. 2002 Mar 5;208(2):233-7. doi: 10.1111/j.1574-6968.2002.tb11087.x. [PubMed:11959442 ]