NP-MRD: Showing NP-Card for Phepropeptin C (NP0003988)

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Record Information

Version

1.0

Created at

2020-12-09 01:31:03 UTC

Updated at

2021-07-15 16:47:56 UTC

NP-MRD ID

NP0003988

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Phepropeptin C

Provided By

NPAtlas

Description

Phepropeptin C is found in Streptomyces sp. and Streptomyces sp. MK600-cF7. It was first documented in 2001 (PMID: 11827028). Based on a literature review very few articles have been published on (3S,6R,9S,12S,15R,20aR)-15-benzyl-9-(butan-2-yl)-1,4,7,10,13-pentahydroxy-3,6,12-tris(2-methylpropyl)-3H,6H,9H,12H,15H,16H,18H,19H,20H,20aH-pyrrolo[1,2-a]1,4,7,10,13,16-hexaazacyclooctadecan-16-one.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652307012117493D          

110112  0  0  0  0            999 V2000
   -1.6881    5.1623    2.8488 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2892    4.7369    2.4539 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1975    4.2858    1.0158 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6006    5.3537    0.0362 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7293    2.9204    0.7490 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1127    2.7224    1.0725 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2703    2.5074    0.3648 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1405    3.4746    0.4476 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7589    1.4068   -0.4796 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3147    1.3514   -1.8864 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6691    2.5503   -2.7316 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1050    3.8481   -2.3031 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3043    2.2008   -4.1587 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6504    0.1154    0.2211 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7189   -0.8948    0.0710 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9570   -1.1715    1.0900 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4032   -1.7664   -1.0804 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6649   -3.2251   -0.8752 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.0675   -3.6107   -0.5753 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.1782   -5.1329   -0.3964 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7191   -2.9786    0.5962 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0129   -1.5109   -1.4455 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0759   -2.3755   -1.9860 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4513   -1.9960   -3.1157 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4229   -3.6433   -1.5052 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6628   -4.1026   -2.2549 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1921   -5.1718   -1.3182 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2278   -5.1992   -0.1527 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8569   -3.7492   -0.1384 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.8914   -2.7891    0.8724 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2776   -3.1239    1.9664 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4853   -1.4542    0.9696 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6238   -1.5804    2.0043 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6385   -2.5701    1.5849 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5368   -3.8759    2.0088 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4922   -4.7897    1.6064 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5449   -4.4434    0.7949 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6591   -3.1440    0.3639 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7033   -2.2038    0.7599 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0838   -0.8997   -0.1925 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9746    0.4008   -0.7078 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7204    0.5105   -1.9606 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1199    1.6955    0.0158 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5928    1.9125    0.2157 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0325    3.1530    0.8787 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6333    4.4096    0.1432 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7217    3.3063    2.3280 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4561    1.7061    1.2748 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.1052    1.9887    1.5663 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4543    1.4283    2.5815 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7084    6.2509    3.1641 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4011    5.1352    1.9954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0026    4.5742    3.7236 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3744    5.6013    2.6623 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1001    3.9187    3.1184 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9192    4.1861    0.8473 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2608    4.9970   -0.9734 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6904    5.5166    0.0833 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0008    6.2634    0.2401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5691    2.6672   -0.3072 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2271    2.7714    2.1533 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9008    1.5693   -0.5616 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9262    0.5247   -2.3952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2467    1.1604   -1.9618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7995    2.6358   -2.6517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3141    3.7176   -1.5397 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5511    4.2666   -3.1914 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8590    4.5898   -2.0005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5306    1.3962   -4.2175 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9049    3.1135   -4.6578 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2075    1.7946   -4.6561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3979   -0.0585    0.9725 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9874   -1.4968   -1.9897 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0018   -3.7084   -0.1227 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4717   -3.6851   -1.9030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7342   -3.4157   -1.4697 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9601   -5.6530   -1.3703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5196   -5.5042    0.4060 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2166   -5.4094   -0.1239 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1009   -2.7856    1.4703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3349   -2.1083    0.2535 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5111   -3.7051    0.9708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7017   -0.5052   -1.2653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2987   -4.4945   -1.6426 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3500   -3.2560   -2.3979 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3493   -4.5472   -3.2301 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2071   -4.9379   -0.9672 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1864   -6.1368   -1.8747 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6012   -5.5769    0.7718 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3108   -5.7128   -0.5216 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7269   -0.7440    1.4133 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1084   -0.6375    2.2274 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1807   -1.9272    2.9871 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7133   -4.2077    2.6606 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3681   -5.8132    1.9694 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2623   -5.1830    0.5059 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4907   -2.8913   -0.2729 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8316   -1.1954    0.3983 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7059   -1.5932   -0.7352 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6680    2.4858   -0.6386 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9720    0.9995    0.7400 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0619    1.8884   -0.8095 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1751    3.1512    0.8221 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4831    4.9348   -0.3326 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8468    4.1823   -0.6364 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1578    5.0978    0.8679 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0265    2.4494    2.9615 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7067    3.6937    2.5514 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3991    4.1473    2.6907 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0296    1.4639    2.1511 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
  9 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 17 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
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M  END

     RDKit          3D

110112  0  0  0  0  0  0  0  0999 V2000
   -1.6881    5.1623    2.8488 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2892    4.7369    2.4539 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1975    4.2858    1.0158 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6006    5.3537    0.0362 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7293    2.9204    0.7490 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -3.2703    2.5074    0.3648 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.6691    2.5503   -2.7316 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1050    3.8481   -2.3031 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3043    2.2008   -4.1587 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.1782   -5.1329   -0.3964 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7191   -2.9786    0.5962 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0129   -1.5109   -1.4455 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0759   -2.3755   -1.9860 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4513   -1.9960   -3.1157 O   0  0  0  0  0  0  0  0  0  0  0  0
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    1.6628   -4.1026   -2.2549 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1921   -5.1718   -1.3182 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2278   -5.1992   -0.1527 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8569   -3.7492   -0.1384 N   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652307012117493D          

110112  0  0  0  0            999 V2000
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M  END
> <DATABASE_ID>
NP0003988

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]N1C(=O)[C@]2([H])N(C(=O)[C@]([H])(N([H])C(=O)[C@@]([H])(N([H])C(=O)[C@@]([H])(N([H])C(=O)[C@]([H])(N([H])C(=O)[C@]1([H])C([H])([H])C([H])(C([H])([H])[H])C([H])([H])[H])C([H])([H])C([H])(C([H])([H])[H])C([H])([H])[H])[C@@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[H])C([H])([H])C([H])(C([H])([H])[H])C([H])([H])[H])C([H])([H])C1=C([H])C([H])=C([H])C([H])=C1[H])C([H])([H])C([H])([H])C2([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C38H60N6O6/c1-9-25(8)32-37(49)41-28(19-23(4)5)34(46)42-30(21-26-14-11-10-12-15-26)38(50)44-17-13-16-31(44)36(48)40-27(18-22(2)3)33(45)39-29(20-24(6)7)35(47)43-32/h10-12,14-15,22-25,27-32H,9,13,16-21H2,1-8H3,(H,39,45)(H,40,48)(H,41,49)(H,42,46)(H,43,47)/t25-,27-,28-,29+,30+,31+,32-/m0/s1

> <INCHI_KEY>
AKQUYKYHJPCGHJ-OMPYVEQSSA-N

> <FORMULA>
C38H60N6O6

> <MOLECULAR_WEIGHT>
696.934

> <EXACT_MASS>
696.457433676

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
110

> <JCHEM_AVERAGE_POLARIZABILITY>
76.3508243613563

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S,6R,9S,12S,15R,20aR)-15-benzyl-9-[(2S)-butan-2-yl]-3,6,12-tris(2-methylpropyl)-icosahydropyrrolo[1,2-a]1,4,7,10,13,16-hexaazacyclooctadecane-1,4,7,10,13,16-hexone

> <ALOGPS_LOGP>
3.18

> <JCHEM_LOGP>
3.8042723166666668

> <ALOGPS_LOGS>
-4.34

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.03097447778341

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.600763669814677

> <JCHEM_PKA_STRONGEST_BASIC>
-2.6968225984891454

> <JCHEM_POLAR_SURFACE_AREA>
165.81

> <JCHEM_REFRACTIVITY>
190.7099

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.21e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,6R,9S,12S,15R,20aR)-15-benzyl-9-[(2S)-butan-2-yl]-3,6,12-tris(2-methylpropyl)-tetradecahydropyrrolo[1,2-a]1,4,7,10,13,16-hexaazacyclooctadecane-1,4,7,10,13,16-hexone

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

110112  0  0  0  0  0  0  0  0999 V2000
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    3.1084   -0.6375    2.2274 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1807   -1.9272    2.9871 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7133   -4.2077    2.6606 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3681   -5.8132    1.9694 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2623   -5.1830    0.5059 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4907   -2.8913   -0.2729 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8316   -1.1954    0.3983 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7059   -1.5932   -0.7352 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6680    2.4858   -0.6386 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9720    0.9995    0.7400 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0619    1.8884   -0.8095 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1751    3.1512    0.8221 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4831    4.9348   -0.3326 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8468    4.1823   -0.6364 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1578    5.0978    0.8679 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0265    2.4494    2.9615 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7067    3.6937    2.5514 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3991    4.1473    2.6907 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0296    1.4639    2.1511 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
  9 14  1  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 19 21  1  0
 17 22  1  0
 22 23  1  0
 23 24  2  0
 23 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  2  0
 30 32  1  0
 32 33  1  0
 33 34  1  0
 34 35  2  0
 35 36  1  0
 36 37  2  0
 37 38  1  0
 38 39  2  0
 32 40  1  0
 40 41  1  0
 41 42  2  0
 41 43  1  0
 43 44  1  0
 44 45  1  0
 45 46  1  0
 45 47  1  0
 43 48  1  0
 48 49  1  0
 49 50  2  0
 49  5  1  0
 29 25  1  0
 39 34  1  0
  1 51  1  0
  1 52  1  0
  1 53  1  0
  2 54  1  0
  2 55  1  0
  3 56  1  6
  4 57  1  0
  4 58  1  0
  4 59  1  0
  5 60  1  6
  6 61  1  0
  9 62  1  6
 10 63  1  0
 10 64  1  0
 11 65  1  6
 12 66  1  0
 12 67  1  0
 12 68  1  0
 13 69  1  0
 13 70  1  0
 13 71  1  0
 14 72  1  0
 17 73  1  6
 18 74  1  0
 18 75  1  0
 19 76  1  6
 20 77  1  0
 20 78  1  0
 20 79  1  0
 21 80  1  0
 21 81  1  0
 21 82  1  0
 22 83  1  0
 25 84  1  1
 26 85  1  0
 26 86  1  0
 27 87  1  0
 27 88  1  0
 28 89  1  0
 28 90  1  0
 32 91  1  1
 33 92  1  0
 33 93  1  0
 35 94  1  0
 36 95  1  0
 37 96  1  0
 38 97  1  0
 39 98  1  0
 40 99  1  0
 43100  1  6
 44101  1  0
 44102  1  0
 45103  1  1
 46104  1  0
 46105  1  0
 46106  1  0
 47107  1  0
 47108  1  0
 47109  1  0
 48110  1  0
M  END

HEADER    PROTEIN                                 01-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   01-JUL-21         0                                  
HETATM    1  C   UNK     0      -1.688   5.162   2.849  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.289   4.737   2.454  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.198   4.286   1.016  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.601   5.354   0.036  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.729   2.920   0.749  0.00  0.00           C+0
HETATM    6  N   UNK     0      -2.113   2.722   1.073  0.00  0.00           N+0
HETATM    7  C   UNK     0      -3.270   2.507   0.365  0.00  0.00           C+0
HETATM    8  O   UNK     0      -4.141   3.475   0.448  0.00  0.00           O+0
HETATM    9  C   UNK     0      -3.759   1.407  -0.480  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.315   1.351  -1.886  0.00  0.00           C+0
HETATM   11  C   UNK     0      -3.669   2.550  -2.732  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.105   3.848  -2.303  0.00  0.00           C+0
HETATM   13  C   UNK     0      -3.304   2.201  -4.159  0.00  0.00           C+0
HETATM   14  N   UNK     0      -3.650   0.115   0.221  0.00  0.00           N+0
HETATM   15  C   UNK     0      -2.719  -0.895   0.071  0.00  0.00           C+0
HETATM   16  O   UNK     0      -1.957  -1.172   1.090  0.00  0.00           O+0
HETATM   17  C   UNK     0      -2.403  -1.766  -1.080  0.00  0.00           C+0
HETATM   18  C   UNK     0      -2.665  -3.225  -0.875  0.00  0.00           C+0
HETATM   19  C   UNK     0      -4.067  -3.611  -0.575  0.00  0.00           C+0
HETATM   20  C   UNK     0      -4.178  -5.133  -0.396  0.00  0.00           C+0
HETATM   21  C   UNK     0      -4.719  -2.979   0.596  0.00  0.00           C+0
HETATM   22  N   UNK     0      -1.013  -1.511  -1.446  0.00  0.00           N+0
HETATM   23  C   UNK     0      -0.076  -2.376  -1.986  0.00  0.00           C+0
HETATM   24  O   UNK     0       0.451  -1.996  -3.116  0.00  0.00           O+0
HETATM   25  C   UNK     0       0.423  -3.643  -1.505  0.00  0.00           C+0
HETATM   26  C   UNK     0       1.663  -4.103  -2.255  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.192  -5.172  -1.318  0.00  0.00           C+0
HETATM   28  C   UNK     0       1.228  -5.199  -0.153  0.00  0.00           C+0
HETATM   29  N   UNK     0       0.857  -3.749  -0.138  0.00  0.00           N+0
HETATM   30  C   UNK     0       0.891  -2.789   0.872  0.00  0.00           C+0
HETATM   31  O   UNK     0       0.278  -3.124   1.966  0.00  0.00           O+0
HETATM   32  C   UNK     0       1.485  -1.454   0.970  0.00  0.00           C+0
HETATM   33  C   UNK     0       2.624  -1.580   2.004  0.00  0.00           C+0
HETATM   34  C   UNK     0       3.639  -2.570   1.585  0.00  0.00           C+0
HETATM   35  C   UNK     0       3.537  -3.876   2.009  0.00  0.00           C+0
HETATM   36  C   UNK     0       4.492  -4.790   1.606  0.00  0.00           C+0
HETATM   37  C   UNK     0       5.545  -4.443   0.795  0.00  0.00           C+0
HETATM   38  C   UNK     0       5.659  -3.144   0.364  0.00  0.00           C+0
HETATM   39  C   UNK     0       4.703  -2.204   0.760  0.00  0.00           C+0
HETATM   40  N   UNK     0       2.084  -0.900  -0.193  0.00  0.00           N+0
HETATM   41  C   UNK     0       1.975   0.401  -0.708  0.00  0.00           C+0
HETATM   42  O   UNK     0       1.720   0.510  -1.961  0.00  0.00           O+0
HETATM   43  C   UNK     0       2.120   1.696   0.016  0.00  0.00           C+0
HETATM   44  C   UNK     0       3.593   1.913   0.216  0.00  0.00           C+0
HETATM   45  C   UNK     0       4.032   3.153   0.879  0.00  0.00           C+0
HETATM   46  C   UNK     0       3.633   4.410   0.143  0.00  0.00           C+0
HETATM   47  C   UNK     0       3.722   3.306   2.328  0.00  0.00           C+0
HETATM   48  N   UNK     0       1.456   1.706   1.275  0.00  0.00           N+0
HETATM   49  C   UNK     0       0.105   1.989   1.566  0.00  0.00           C+0
HETATM   50  O   UNK     0      -0.454   1.428   2.582  0.00  0.00           O+0
HETATM   51  H   UNK     0      -1.708   6.251   3.164  0.00  0.00           H+0
HETATM   52  H   UNK     0      -2.401   5.135   1.995  0.00  0.00           H+0
HETATM   53  H   UNK     0      -2.003   4.574   3.724  0.00  0.00           H+0
HETATM   54  H   UNK     0       0.374   5.601   2.662  0.00  0.00           H+0
HETATM   55  H   UNK     0       0.100   3.919   3.118  0.00  0.00           H+0
HETATM   56  H   UNK     0       0.919   4.186   0.847  0.00  0.00           H+0
HETATM   57  H   UNK     0      -0.261   4.997  -0.973  0.00  0.00           H+0
HETATM   58  H   UNK     0      -1.690   5.517   0.083  0.00  0.00           H+0
HETATM   59  H   UNK     0      -0.001   6.263   0.240  0.00  0.00           H+0
HETATM   60  H   UNK     0      -0.569   2.667  -0.307  0.00  0.00           H+0
HETATM   61  H   UNK     0      -2.227   2.771   2.153  0.00  0.00           H+0
HETATM   62  H   UNK     0      -4.901   1.569  -0.562  0.00  0.00           H+0
HETATM   63  H   UNK     0      -3.926   0.525  -2.395  0.00  0.00           H+0
HETATM   64  H   UNK     0      -2.247   1.160  -1.962  0.00  0.00           H+0
HETATM   65  H   UNK     0      -4.800   2.636  -2.652  0.00  0.00           H+0
HETATM   66  H   UNK     0      -2.314   3.718  -1.540  0.00  0.00           H+0
HETATM   67  H   UNK     0      -2.551   4.267  -3.191  0.00  0.00           H+0
HETATM   68  H   UNK     0      -3.859   4.590  -2.001  0.00  0.00           H+0
HETATM   69  H   UNK     0      -2.531   1.396  -4.218  0.00  0.00           H+0
HETATM   70  H   UNK     0      -2.905   3.114  -4.658  0.00  0.00           H+0
HETATM   71  H   UNK     0      -4.207   1.795  -4.656  0.00  0.00           H+0
HETATM   72  H   UNK     0      -4.398  -0.059   0.973  0.00  0.00           H+0
HETATM   73  H   UNK     0      -2.987  -1.497  -1.990  0.00  0.00           H+0
HETATM   74  H   UNK     0      -2.002  -3.708  -0.123  0.00  0.00           H+0
HETATM   75  H   UNK     0      -2.472  -3.685  -1.903  0.00  0.00           H+0
HETATM   76  H   UNK     0      -4.734  -3.416  -1.470  0.00  0.00           H+0
HETATM   77  H   UNK     0      -3.960  -5.653  -1.370  0.00  0.00           H+0
HETATM   78  H   UNK     0      -3.520  -5.504   0.406  0.00  0.00           H+0
HETATM   79  H   UNK     0      -5.217  -5.409  -0.124  0.00  0.00           H+0
HETATM   80  H   UNK     0      -4.101  -2.786   1.470  0.00  0.00           H+0
HETATM   81  H   UNK     0      -5.335  -2.108   0.254  0.00  0.00           H+0
HETATM   82  H   UNK     0      -5.511  -3.705   0.971  0.00  0.00           H+0
HETATM   83  H   UNK     0      -0.702  -0.505  -1.265  0.00  0.00           H+0
HETATM   84  H   UNK     0      -0.299  -4.495  -1.643  0.00  0.00           H+0
HETATM   85  H   UNK     0       2.350  -3.256  -2.398  0.00  0.00           H+0
HETATM   86  H   UNK     0       1.349  -4.547  -3.230  0.00  0.00           H+0
HETATM   87  H   UNK     0       3.207  -4.938  -0.967  0.00  0.00           H+0
HETATM   88  H   UNK     0       2.186  -6.137  -1.875  0.00  0.00           H+0
HETATM   89  H   UNK     0       1.601  -5.577   0.772  0.00  0.00           H+0
HETATM   90  H   UNK     0       0.311  -5.713  -0.522  0.00  0.00           H+0
HETATM   91  H   UNK     0       0.727  -0.744   1.413  0.00  0.00           H+0
HETATM   92  H   UNK     0       3.108  -0.638   2.227  0.00  0.00           H+0
HETATM   93  H   UNK     0       2.181  -1.927   2.987  0.00  0.00           H+0
HETATM   94  H   UNK     0       2.713  -4.208   2.661  0.00  0.00           H+0
HETATM   95  H   UNK     0       4.368  -5.813   1.969  0.00  0.00           H+0
HETATM   96  H   UNK     0       6.262  -5.183   0.506  0.00  0.00           H+0
HETATM   97  H   UNK     0       6.491  -2.891  -0.273  0.00  0.00           H+0
HETATM   98  H   UNK     0       4.832  -1.195   0.398  0.00  0.00           H+0
HETATM   99  H   UNK     0       2.706  -1.593  -0.735  0.00  0.00           H+0
HETATM  100  H   UNK     0       1.668   2.486  -0.639  0.00  0.00           H+0
HETATM  101  H   UNK     0       3.972   1.000   0.740  0.00  0.00           H+0
HETATM  102  H   UNK     0       4.062   1.888  -0.810  0.00  0.00           H+0
HETATM  103  H   UNK     0       5.175   3.151   0.822  0.00  0.00           H+0
HETATM  104  H   UNK     0       4.483   4.935  -0.333  0.00  0.00           H+0
HETATM  105  H   UNK     0       2.847   4.182  -0.636  0.00  0.00           H+0
HETATM  106  H   UNK     0       3.158   5.098   0.868  0.00  0.00           H+0
HETATM  107  H   UNK     0       4.027   2.449   2.962  0.00  0.00           H+0
HETATM  108  H   UNK     0       2.707   3.694   2.551  0.00  0.00           H+0
HETATM  109  H   UNK     0       4.399   4.147   2.691  0.00  0.00           H+0
HETATM  110  H   UNK     0       2.030   1.464   2.151  0.00  0.00           H+0
CONECT    1    2   51   52   53                                             
CONECT    2    1    3   54   55                                             
CONECT    3    2    4    5   56                                             
CONECT    4    3   57   58   59                                             
CONECT    5    3    6   49   60                                             
CONECT    6    5    7   61                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   14   62                                             
CONECT   10    9   11   63   64                                             
CONECT   11   10   12   13   65                                             
CONECT   12   11   66   67   68                                             
CONECT   13   11   69   70   71                                             
CONECT   14    9   15   72                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   22   73                                             
CONECT   18   17   19   74   75                                             
CONECT   19   18   20   21   76                                             
CONECT   20   19   77   78   79                                             
CONECT   21   19   80   81   82                                             
CONECT   22   17   23   83                                                  
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   29   84                                             
CONECT   26   25   27   85   86                                             
CONECT   27   26   28   87   88                                             
CONECT   28   27   29   89   90                                             
CONECT   29   28   30   25                                                  
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33   40   91                                             
CONECT   33   32   34   92   93                                             
CONECT   34   33   35   39                                                  
CONECT   35   34   36   94                                                  
CONECT   36   35   37   95                                                  
CONECT   37   36   38   96                                                  
CONECT   38   37   39   97                                                  
CONECT   39   38   34   98                                                  
CONECT   40   32   41   99                                                  
CONECT   41   40   42   43                                                  
CONECT   42   41                                                            
CONECT   43   41   44   48  100                                             
CONECT   44   43   45  101  102                                             
CONECT   45   44   46   47  103                                             
CONECT   46   45  104  105  106                                             
CONECT   47   45  107  108  109                                             
CONECT   48   43   49  110                                                  
CONECT   49   48   50    5                                                  
CONECT   50   49                                                            
CONECT   51    1                                                            
CONECT   52    1                                                            
CONECT   53    1                                                            
CONECT   54    2                                                            
CONECT   55    2                                                            
CONECT   56    3                                                            
CONECT   57    4                                                            
CONECT   58    4                                                            
CONECT   59    4                                                            
CONECT   60    5                                                            
CONECT   61    6                                                            
CONECT   62    9                                                            
CONECT   63   10                                                            
CONECT   64   10                                                            
CONECT   65   11                                                            
CONECT   66   12                                                            
CONECT   67   12                                                            
CONECT   68   12                                                            
CONECT   69   13                                                            
CONECT   70   13                                                            
CONECT   71   13                                                            
CONECT   72   14                                                            
CONECT   73   17                                                            
CONECT   74   18                                                            
CONECT   75   18                                                            
CONECT   76   19                                                            
CONECT   77   20                                                            
CONECT   78   20                                                            
CONECT   79   20                                                            
CONECT   80   21                                                            
CONECT   81   21                                                            
CONECT   82   21                                                            
CONECT   83   22                                                            
CONECT   84   25                                                            
CONECT   85   26                                                            
CONECT   86   26                                                            
CONECT   87   27                                                            
CONECT   88   27                                                            
CONECT   89   28                                                            
CONECT   90   28                                                            
CONECT   91   32                                                            
CONECT   92   33                                                            
CONECT   93   33                                                            
CONECT   94   35                                                            
CONECT   95   36                                                            
CONECT   96   37                                                            
CONECT   97   38                                                            
CONECT   98   39                                                            
CONECT   99   40                                                            
CONECT  100   43                                                            
CONECT  101   44                                                            
CONECT  102   44                                                            
CONECT  103   45                                                            
CONECT  104   46                                                            
CONECT  105   46                                                            
CONECT  106   46                                                            
CONECT  107   47                                                            
CONECT  108   47                                                            
CONECT  109   47                                                            
CONECT  110   48                                                            
MASTER        0    0    0    0    0    0    0    0  110    0  224    0
END

RDKit          3D

110112  0  0  0  0  0  0  0  0999 V2000
   -1.6881    5.1623    2.8488 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2892    4.7369    2.4539 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1975    4.2858    1.0158 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6006    5.3537    0.0362 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7293    2.9204    0.7490 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1127    2.7224    1.0725 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2703    2.5074    0.3648 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1405    3.4746    0.4476 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7589    1.4068   -0.4796 C   0  0  1  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₃₈H₆₀N₆O₆

Average Mass

696.9340 Da

Monoisotopic Mass

696.45743 Da

IUPAC Name

(3S,6R,9S,12S,15R,20aR)-15-benzyl-9-[(2S)-butan-2-yl]-3,6,12-tris(2-methylpropyl)-icosahydropyrrolo[1,2-a]1,4,7,10,13,16-hexaazacyclooctadecane-1,4,7,10,13,16-hexone

Traditional Name

(3S,6R,9S,12S,15R,20aR)-15-benzyl-9-[(2S)-butan-2-yl]-3,6,12-tris(2-methylpropyl)-tetradecahydropyrrolo[1,2-a]1,4,7,10,13,16-hexaazacyclooctadecane-1,4,7,10,13,16-hexone

CAS Registry Number

Not Available

SMILES

CCC(C)[C@@H]1NC(=O)[C@@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H]2CCCN2C(=O)[C@@H](CC2=CC=CC=C2)NC(=O)[C@H](CC(C)C)NC1=O

InChI Identifier

InChI=1S/C38H60N6O6/c1-9-25(8)32-37(49)41-28(19-23(4)5)34(46)42-30(21-26-14-11-10-12-15-26)38(50)44-17-13-16-31(44)36(48)40-27(18-22(2)3)33(45)39-29(20-24(6)7)35(47)43-32/h10-12,14-15,22-25,27-32H,9,13,16-21H2,1-8H3,(H,39,45)(H,40,48)(H,41,49)(H,42,46)(H,43,47)/t25?,27-,28-,29+,30+,31+,32-/m0/s1

InChI Key

AKQUYKYHJPCGHJ-OMPYVEQSSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces sp.	NPAtlas	11827028
Streptomyces sp. MK600-cF7	Bacteria	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.18	ALOGPS
logP	3.8	ChemAxon
logS	-4.3	ALOGPS
pKa (Strongest Acidic)	10.6	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	165.81 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	190.71 m³·mol⁻¹	ChemAxon
Polarizability	76.35 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

NPAtlas ID

NPA013620

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78437893

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139586868

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Sekizawa R, Momose I, Kinoshita N, Naganawa H, Hamada M, Muraoka Y, Iinuma H, Takeuchi T: Isolation and structural determination of phepropeptins A, B, C, and D, new proteasome inhibitors, produced by Streptomyces sp. J Antibiot (Tokyo). 2001 Nov;54(11):874-81. doi: 10.7164/antibiotics.54.874. [PubMed:11827028 ]

Showing NP-Card for Phepropeptin C (NP0003988)

MOL for NP0003988 (Phepropeptin C)

3D MOL for NP0003988 (Phepropeptin C)

3D SDF for NP0003988 (Phepropeptin C)

3D-SDF for NP0003988 (Phepropeptin C)

PDB for NP0003988 (Phepropeptin C)

3D PDB for NP0003988 (Phepropeptin C)

SMILES for NP0003988 (Phepropeptin C)

INCHI for NP0003988 (Phepropeptin C)

Structure for NP0003988 (Phepropeptin C)

3D Structure for NP0003988 (Phepropeptin C)