NP-MRD: Showing NP-Card for Chrolactomycin (NP0003963)

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Record Information

Version

1.0

Created at

2020-12-09 01:29:46 UTC

Updated at

2021-07-15 16:47:51 UTC

NP-MRD ID

NP0003963

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Chrolactomycin

Provided By

NPAtlas

Description

Chrolactomycin is found in Streptomyces sp. and Streptomyces sp. 569N-3. It was first documented in 2001 (PMID: 11776440). Based on a literature review very few articles have been published on (1S,3S,6S,10R,12R,13R,16S,19S)-16-methoxy-3,10,12-trimethyl-14-methylidene-15,17-dioxo-18,20-dioxatetracyclo[11.5.2.0¹,⁶.0¹⁶,¹⁹]Icos-4-ene-4-carboxylic acid (PMID: 26389497) (PMID: 26389486) (PMID: 26389480) (PMID: 26389479).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117513D          

 63 66  0  0  0  0            999 V2000
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M  END

     RDKit          3D

 63 66  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652306242117513D          

 63 66  0  0  0  0            999 V2000
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    5.3127   -1.9882   -1.9425 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6665   -1.8615    0.6061 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6324   -1.0130    1.2188 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3653   -1.7784    1.4369 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0755   -2.6724    0.3422 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6054   -2.7934    0.4017 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2873   -1.8413   -0.5392 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2833   -2.6715   -1.3626 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1276   -0.8027    0.1812 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1189    0.5416   -0.5192 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.4412    1.2188   -0.1942 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9643    1.3258    0.0486 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8664    0.4684    0.0720 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1473    0.9787    0.8690 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9523    3.7633   -2.3880 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.3943    3.3530    3.0637 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.3179   -0.4732   -1.4733 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7735    1.3013   -1.3188 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8023    0.6918   -0.2505 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9685    0.2635   -2.2388 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6278   -0.7732   -2.9169 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3957    1.0202   -2.7575 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2853   -1.8571   -1.7437 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7989   -2.8611    0.9632 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0360   -0.7857    2.2571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4728   -1.1339    1.7261 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5319   -2.4349    2.3463 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2969   -3.7227    0.5326 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2369   -2.4316   -0.6675 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9351   -3.8434    0.2649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9560   -2.5155    1.4379 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6086   -1.3194   -1.2254 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8340   -2.9590   -2.3318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1889   -2.0733   -1.6007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6148   -3.5358   -0.7681 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1889   -1.1723    0.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7709   -0.6838    1.2353 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0284    0.3910   -1.6065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0026    0.6629    0.5846 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1155    1.2664   -1.0756 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2585    2.2418    0.2465 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2374    1.6999    1.0380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0360    0.8128    1.9415 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  1  0  0  0
  6  7  1  0  0  0  0
  5  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 11 10  1  1  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
 15 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 29  2  1  0  0  0  0
 31  5  1  0  0  0  0
 20 11  1  0  0  0  0
 31 11  1  0  0  0  0
  1 32  1  0  0  0  0
  1 33  1  0  0  0  0
  7 34  1  0  0  0  0
  7 35  1  0  0  0  0
  7 36  1  0  0  0  0
 12 37  1  0  0  0  0
 12 38  1  0  0  0  0
 13 39  1  1  0  0  0
 14 40  1  0  0  0  0
 14 41  1  0  0  0  0
 14 42  1  0  0  0  0
 18 43  1  0  0  0  0
 19 44  1  0  0  0  0
 20 45  1  1  0  0  0
 21 46  1  0  0  0  0
 21 47  1  0  0  0  0
 22 48  1  0  0  0  0
 22 49  1  0  0  0  0
 23 50  1  0  0  0  0
 23 51  1  0  0  0  0
 24 52  1  6  0  0  0
 25 53  1  0  0  0  0
 25 54  1  0  0  0  0
 25 55  1  0  0  0  0
 26 56  1  0  0  0  0
 26 57  1  0  0  0  0
 27 58  1  6  0  0  0
 28 59  1  0  0  0  0
 28 60  1  0  0  0  0
 28 61  1  0  0  0  0
 29 62  1  1  0  0  0
 31 63  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0003963

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C1=C([H])[C@]2([H])C([H])([H])C([H])([H])C([H])([H])[C@@]([H])(C([H])([H])[H])C([H])([H])[C@@]([H])(C([H])([H])[H])[C@@]3([H])O[C@]4([H])[C@@](OC([H])([H])[H])(C(=O)O[C@@]24C([H])([H])[C@]1([H])C([H])([H])[H])C(=O)C3=C([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C24H32O7/c1-12-7-6-8-16-10-17(20(26)27)14(3)11-23(16)21-24(29-5,22(28)31-23)19(25)15(4)18(30-21)13(2)9-12/h10,12-14,16,18,21H,4,6-9,11H2,1-3,5H3,(H,26,27)/t12-,13-,14+,16+,18-,21+,23+,24-/m1/s1

> <INCHI_KEY>
PDRSLLCMBAJBJG-NXEQBSQSSA-N

> <FORMULA>
C24H32O7

> <MOLECULAR_WEIGHT>
432.513

> <EXACT_MASS>
432.21480337

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
63

> <JCHEM_AVERAGE_POLARIZABILITY>
45.473955309072984

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,3S,6S,10R,12R,13R,16S,19S)-16-methoxy-3,10,12-trimethyl-14-methylidene-15,17-dioxo-18,20-dioxatetracyclo[11.5.2.0^{1,6}.0^{16,19}]icos-4-ene-4-carboxylic acid

> <ALOGPS_LOGP>
3.44

> <JCHEM_LOGP>
4.288477128

> <ALOGPS_LOGS>
-4.48

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.257393741908907

> <JCHEM_PKA_STRONGEST_BASIC>
-3.9625637186252756

> <JCHEM_POLAR_SURFACE_AREA>
99.13000000000001

> <JCHEM_REFRACTIVITY>
111.6286

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.44e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,3S,6S,10R,12R,13R,16S,19S)-16-methoxy-3,10,12-trimethyl-14-methylidene-15,17-dioxo-18,20-dioxatetracyclo[11.5.2.0^{1,6}.0^{16,19}]icos-4-ene-4-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 63 66  0  0  0  0  0  0  0  0999 V2000
   -2.3101    2.9593   -1.7677 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5470    2.4435   -0.8544 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1878    2.9207   -0.6271 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3991    3.6549   -1.4277 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4304    2.4375    0.6692 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1081    3.2496    1.6414 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3126    3.0805    2.9209 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9114    2.5165    0.6198 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5976    3.4932    0.1888 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3577    1.3109    1.1392 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4785    0.3305    0.5783 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8262    0.2819   -0.8853 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3272   -0.0643   -0.9307 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8731    0.1028   -2.3054 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4419   -1.4364   -0.3723 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4495   -2.3263   -0.9250 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5349   -3.4971   -0.4291 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3127   -1.9882   -1.9425 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6665   -1.8615    0.6061 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6324   -1.0130    1.2188 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3653   -1.7784    1.4369 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0755   -2.6724    0.3422 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6054   -2.7934    0.4017 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2873   -1.8413   -0.5392 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2833   -2.6715   -1.3626 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1276   -0.8027    0.1812 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1189    0.5416   -0.5192 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.4412    1.2188   -0.1942 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9643    1.3258    0.0486 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8664    0.4684    0.0720 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1473    0.9787    0.8690 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9523    3.7633   -2.3880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3125    2.5992   -1.9276 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1268    2.1030    3.3682 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3943    3.3530    3.0637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2212    3.8372    3.5698 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3179   -0.4732   -1.4733 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7735    1.3013   -1.3188 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8023    0.6918   -0.2505 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9685    0.2635   -2.2388 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6278   -0.7732   -2.9169 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3957    1.0202   -2.7575 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2853   -1.8571   -1.7437 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7989   -2.8611    0.9632 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0360   -0.7857    2.2571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4728   -1.1339    1.7261 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5319   -2.4349    2.3463 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2969   -3.7227    0.5326 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2369   -2.4316   -0.6675 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9351   -3.8434    0.2649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9560   -2.5155    1.4379 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6086   -1.3194   -1.2254 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8340   -2.9590   -2.3318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1889   -2.0733   -1.6007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6148   -3.5358   -0.7681 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1889   -1.1723    0.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7709   -0.6838    1.2353 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0284    0.3910   -1.6065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0026    0.6629    0.5846 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1155    1.2664   -1.0756 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2585    2.2418    0.2465 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2374    1.6999    1.0380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0360    0.8128    1.9415 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  1  1
  6  7  1  0
  5  8  1  0
  8  9  2  0
  8 10  1  0
 11 10  1  1
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 15 19  2  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
 27 28  1  0
 27 29  1  0
 29 30  1  0
 30 31  1  0
 29  2  1  0
 31  5  1  0
 20 11  1  0
 31 11  1  0
  1 32  1  0
  1 33  1  0
  7 34  1  0
  7 35  1  0
  7 36  1  0
 12 37  1  0
 12 38  1  0
 13 39  1  1
 14 40  1  0
 14 41  1  0
 14 42  1  0
 18 43  1  0
 19 44  1  0
 20 45  1  1
 21 46  1  0
 21 47  1  0
 22 48  1  0
 22 49  1  0
 23 50  1  0
 23 51  1  0
 24 52  1  6
 25 53  1  0
 25 54  1  0
 25 55  1  0
 26 56  1  0
 26 57  1  0
 27 58  1  6
 28 59  1  0
 28 60  1  0
 28 61  1  0
 29 62  1  1
 31 63  1  1
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -2.310   2.959  -1.768  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.547   2.443  -0.854  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.188   2.921  -0.627  0.00  0.00           C+0
HETATM    4  O   UNK     0       0.399   3.655  -1.428  0.00  0.00           O+0
HETATM    5  C   UNK     0       0.430   2.438   0.669  0.00  0.00           C+0
HETATM    6  O   UNK     0      -0.108   3.250   1.641  0.00  0.00           O+0
HETATM    7  C   UNK     0       0.313   3.080   2.921  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.911   2.517   0.620  0.00  0.00           C+0
HETATM    9  O   UNK     0       2.598   3.493   0.189  0.00  0.00           O+0
HETATM   10  O   UNK     0       2.358   1.311   1.139  0.00  0.00           O+0
HETATM   11  C   UNK     0       1.478   0.331   0.578  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.826   0.282  -0.885  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.327  -0.064  -0.931  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.873   0.103  -2.305  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.442  -1.436  -0.372  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.449  -2.326  -0.925  0.00  0.00           C+0
HETATM   17  O   UNK     0       4.535  -3.497  -0.429  0.00  0.00           O+0
HETATM   18  O   UNK     0       5.313  -1.988  -1.942  0.00  0.00           O+0
HETATM   19  C   UNK     0       2.667  -1.861   0.606  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.632  -1.013   1.219  0.00  0.00           C+0
HETATM   21  C   UNK     0       0.365  -1.778   1.437  0.00  0.00           C+0
HETATM   22  C   UNK     0      -0.076  -2.672   0.342  0.00  0.00           C+0
HETATM   23  C   UNK     0      -1.605  -2.793   0.402  0.00  0.00           C+0
HETATM   24  C   UNK     0      -2.287  -1.841  -0.539  0.00  0.00           C+0
HETATM   25  C   UNK     0      -3.283  -2.672  -1.363  0.00  0.00           C+0
HETATM   26  C   UNK     0      -3.128  -0.803   0.181  0.00  0.00           C+0
HETATM   27  C   UNK     0      -3.119   0.542  -0.519  0.00  0.00           C+0
HETATM   28  C   UNK     0      -4.441   1.219  -0.194  0.00  0.00           C+0
HETATM   29  C   UNK     0      -1.964   1.326   0.049  0.00  0.00           C+0
HETATM   30  O   UNK     0      -0.866   0.468   0.072  0.00  0.00           O+0
HETATM   31  C   UNK     0       0.147   0.979   0.869  0.00  0.00           C+0
HETATM   32  H   UNK     0      -1.952   3.763  -2.388  0.00  0.00           H+0
HETATM   33  H   UNK     0      -3.313   2.599  -1.928  0.00  0.00           H+0
HETATM   34  H   UNK     0       0.127   2.103   3.368  0.00  0.00           H+0
HETATM   35  H   UNK     0       1.394   3.353   3.064  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.221   3.837   3.570  0.00  0.00           H+0
HETATM   37  H   UNK     0       1.318  -0.473  -1.473  0.00  0.00           H+0
HETATM   38  H   UNK     0       1.774   1.301  -1.319  0.00  0.00           H+0
HETATM   39  H   UNK     0       3.802   0.692  -0.251  0.00  0.00           H+0
HETATM   40  H   UNK     0       4.968   0.264  -2.239  0.00  0.00           H+0
HETATM   41  H   UNK     0       3.628  -0.773  -2.917  0.00  0.00           H+0
HETATM   42  H   UNK     0       3.396   1.020  -2.757  0.00  0.00           H+0
HETATM   43  H   UNK     0       6.285  -1.857  -1.744  0.00  0.00           H+0
HETATM   44  H   UNK     0       2.799  -2.861   0.963  0.00  0.00           H+0
HETATM   45  H   UNK     0       2.036  -0.786   2.257  0.00  0.00           H+0
HETATM   46  H   UNK     0      -0.473  -1.134   1.726  0.00  0.00           H+0
HETATM   47  H   UNK     0       0.532  -2.435   2.346  0.00  0.00           H+0
HETATM   48  H   UNK     0       0.297  -3.723   0.533  0.00  0.00           H+0
HETATM   49  H   UNK     0       0.237  -2.432  -0.668  0.00  0.00           H+0
HETATM   50  H   UNK     0      -1.935  -3.843   0.265  0.00  0.00           H+0
HETATM   51  H   UNK     0      -1.956  -2.515   1.438  0.00  0.00           H+0
HETATM   52  H   UNK     0      -1.609  -1.319  -1.225  0.00  0.00           H+0
HETATM   53  H   UNK     0      -2.834  -2.959  -2.332  0.00  0.00           H+0
HETATM   54  H   UNK     0      -4.189  -2.073  -1.601  0.00  0.00           H+0
HETATM   55  H   UNK     0      -3.615  -3.536  -0.768  0.00  0.00           H+0
HETATM   56  H   UNK     0      -4.189  -1.172   0.305  0.00  0.00           H+0
HETATM   57  H   UNK     0      -2.771  -0.684   1.235  0.00  0.00           H+0
HETATM   58  H   UNK     0      -3.028   0.391  -1.607  0.00  0.00           H+0
HETATM   59  H   UNK     0      -5.003   0.663   0.585  0.00  0.00           H+0
HETATM   60  H   UNK     0      -5.115   1.266  -1.076  0.00  0.00           H+0
HETATM   61  H   UNK     0      -4.258   2.242   0.247  0.00  0.00           H+0
HETATM   62  H   UNK     0      -2.237   1.700   1.038  0.00  0.00           H+0
HETATM   63  H   UNK     0      -0.036   0.813   1.942  0.00  0.00           H+0
CONECT    1    2   32   33                                                  
CONECT    2    1    3   29                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    8   31                                             
CONECT    6    5    7                                                       
CONECT    7    6   34   35   36                                             
CONECT    8    5    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12   20   31                                             
CONECT   12   11   13   37   38                                             
CONECT   13   12   14   15   39                                             
CONECT   14   13   40   41   42                                             
CONECT   15   13   16   19                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   43                                                       
CONECT   19   15   20   44                                                  
CONECT   20   19   21   11   45                                             
CONECT   21   20   22   46   47                                             
CONECT   22   21   23   48   49                                             
CONECT   23   22   24   50   51                                             
CONECT   24   23   25   26   52                                             
CONECT   25   24   53   54   55                                             
CONECT   26   24   27   56   57                                             
CONECT   27   26   28   29   58                                             
CONECT   28   27   59   60   61                                             
CONECT   29   27   30    2   62                                             
CONECT   30   29   31                                                       
CONECT   31   30    5   11   63                                             
CONECT   32    1                                                            
CONECT   33    1                                                            
CONECT   34    7                                                            
CONECT   35    7                                                            
CONECT   36    7                                                            
CONECT   37   12                                                            
CONECT   38   12                                                            
CONECT   39   13                                                            
CONECT   40   14                                                            
CONECT   41   14                                                            
CONECT   42   14                                                            
CONECT   43   18                                                            
CONECT   44   19                                                            
CONECT   45   20                                                            
CONECT   46   21                                                            
CONECT   47   21                                                            
CONECT   48   22                                                            
CONECT   49   22                                                            
CONECT   50   23                                                            
CONECT   51   23                                                            
CONECT   52   24                                                            
CONECT   53   25                                                            
CONECT   54   25                                                            
CONECT   55   25                                                            
CONECT   56   26                                                            
CONECT   57   26                                                            
CONECT   58   27                                                            
CONECT   59   28                                                            
CONECT   60   28                                                            
CONECT   61   28                                                            
CONECT   62   29                                                            
CONECT   63   31                                                            
MASTER        0    0    0    0    0    0    0    0   63    0  132    0
END

RDKit          3D

63 66  0  0  0  0  0  0  0  0999 V2000
   -2.3101    2.9593   -1.7677 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5470    2.4435   -0.8544 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1878    2.9207   -0.6271 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3991    3.6549   -1.4277 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4304    2.4375    0.6692 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1081    3.2496    1.6414 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3126    3.0805    2.9209 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9114    2.5165    0.6198 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5976    3.4932    0.1888 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3577    1.3109    1.1392 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4785    0.3305    0.5783 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8262    0.2819   -0.8853 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3272   -0.0643   -0.9307 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8731    0.1028   -2.3054 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4419   -1.4364   -0.3723 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4495   -2.3263   -0.9250 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5349   -3.4971   -0.4291 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3127   -1.9882   -1.9425 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6665   -1.8615    0.6061 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6324   -1.0130    1.2188 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3653   -1.7784    1.4369 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0755   -2.6724    0.3422 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6054   -2.7934    0.4017 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2873   -1.8413   -0.5392 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2833   -2.6715   -1.3626 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1276   -0.8027    0.1812 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1189    0.5416   -0.5192 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.4412    1.2188   -0.1942 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9643    1.3258    0.0486 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8664    0.4684    0.0720 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1473    0.9787    0.8690 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9523    3.7633   -2.3880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3125    2.5992   -1.9276 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1268    2.1030    3.3682 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3943    3.3530    3.0637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2212    3.8372    3.5698 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3179   -0.4732   -1.4733 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7735    1.3013   -1.3188 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8023    0.6918   -0.2505 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9685    0.2635   -2.2388 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6278   -0.7732   -2.9169 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3957    1.0202   -2.7575 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2853   -1.8571   -1.7437 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7989   -2.8611    0.9632 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0360   -0.7857    2.2571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4728   -1.1339    1.7261 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5319   -2.4349    2.3463 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2969   -3.7227    0.5326 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2369   -2.4316   -0.6675 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9351   -3.8434    0.2649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9560   -2.5155    1.4379 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6086   -1.3194   -1.2254 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8340   -2.9590   -2.3318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1889   -2.0733   -1.6007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6148   -3.5358   -0.7681 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1889   -1.1723    0.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7709   -0.6838    1.2353 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0284    0.3910   -1.6065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0026    0.6629    0.5846 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1155    1.2664   -1.0756 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2585    2.2418    0.2465 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2374    1.6999    1.0380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0360    0.8128    1.9415 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  1  1
  6  7  1  0
  5  8  1  0
  8  9  2  0
  8 10  1  0
 11 10  1  1
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 15 19  2  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
 27 28  1  0
 27 29  1  0
 29 30  1  0
 30 31  1  0
 29  2  1  0
 31  5  1  0
 20 11  1  0
 31 11  1  0
  1 32  1  0
  1 33  1  0
  7 34  1  0
  7 35  1  0
  7 36  1  0
 12 37  1  0
 12 38  1  0
 13 39  1  1
 14 40  1  0
 14 41  1  0
 14 42  1  0
 18 43  1  0
 19 44  1  0
 20 45  1  1
 21 46  1  0
 21 47  1  0
 22 48  1  0
 22 49  1  0
 23 50  1  0
 23 51  1  0
 24 52  1  6
 25 53  1  0
 25 54  1  0
 25 55  1  0
 26 56  1  0
 26 57  1  0
 27 58  1  6
 28 59  1  0
 28 60  1  0
 28 61  1  0
 29 62  1  1
 31 63  1  1
M  END

View in JSmol View NMR Assignments View DFT Assignments 3D Conformers

Synonyms

Value	Source
(1S,3S,6S,10R,12R,13R,16S,19S)-16-Methoxy-3,10,12-trimethyl-14-methylidene-15,17-dioxo-18,20-dioxatetracyclo[11.5.2.0,.0,]icos-4-ene-4-carboxylate	Generator

Chemical Formula

C₂₄H₃₂O₇

Average Mass

432.5130 Da

Monoisotopic Mass

432.21480 Da

IUPAC Name

(1S,3S,6S,10R,12R,13R,16S,19S)-16-methoxy-3,10,12-trimethyl-14-methylidene-15,17-dioxo-18,20-dioxatetracyclo[11.5.2.0^{1,6}.0^{16,19}]icos-4-ene-4-carboxylic acid

Traditional Name

(1S,3S,6S,10R,12R,13R,16S,19S)-16-methoxy-3,10,12-trimethyl-14-methylidene-15,17-dioxo-18,20-dioxatetracyclo[11.5.2.0^{1,6}.0^{16,19}]icos-4-ene-4-carboxylic acid

CAS Registry Number

Not Available

SMILES

CO[C@]12[C@H]3O[C@H]([C@H](C)C[C@H](C)CCC[C@H]4C=C([C@@H](C)C[C@@]34OC1=O)C(O)=O)C(=C)C2=O

InChI Identifier

InChI=1S/C24H32O7/c1-12-7-6-8-16-10-17(20(26)27)14(3)11-23(16)21-24(29-5,22(28)31-23)19(25)15(4)18(30-21)13(2)9-12/h10,12-14,16,18,21H,4,6-9,11H2,1-3,5H3,(H,26,27)/t12-,13-,14+,16+,18-,21+,23+,24-/m1/s1

InChI Key

PDRSLLCMBAJBJG-NXEQBSQSSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces sp.	NPAtlas	11776440
Streptomyces sp. 569N-3	Bacteria	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.44	ALOGPS
logP	4.29	ChemAxon
logS	-4.5	ALOGPS
pKa (Strongest Acidic)	4.26	ChemAxon
pKa (Strongest Basic)	-4	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	99.13 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	111.63 m³·mol⁻¹	ChemAxon
Polarizability	45.47 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA007237

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

7978622

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

9802860

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Nakai R, Kakita S, Asai A, Chiba S, Akinaga S, Mizukami T, Yamashita Y: Chrolactomycin, a novel antitumor antibiotic produced by Streptomyces sp. J Antibiot (Tokyo). 2001 Oct;54(10):836-9. doi: 10.7164/antibiotics.54.836. [PubMed:11776440 ]
Authors unspecified: Lung Cancer Prevention (PDQ(R)): Patient Version. 2002. [PubMed:26389497 ]
Authors unspecified: Endometrial Cancer Screening (PDQ(R)): Patient Version. 2002. [PubMed:26389486 ]
Authors unspecified: Ewing Sarcoma and Undifferentiated Small Round Cell Sarcomas of Bone and Soft Tissue Treatment (PDQ(R)): Health Professional Version. 2002. [PubMed:26389480 ]
Authors unspecified: Bladder Cancer Treatment (PDQ(R)): Patient Version. 2002. [PubMed:26389479 ]

Showing NP-Card for Chrolactomycin (NP0003963)

MOL for NP0003963 (Chrolactomycin)

3D MOL for NP0003963 (Chrolactomycin)

3D SDF for NP0003963 (Chrolactomycin)

3D-SDF for NP0003963 (Chrolactomycin)

PDB for NP0003963 (Chrolactomycin)

3D PDB for NP0003963 (Chrolactomycin)

SMILES for NP0003963 (Chrolactomycin)

INCHI for NP0003963 (Chrolactomycin)

Structure for NP0003963 (Chrolactomycin)

3D Structure for NP0003963 (Chrolactomycin)