NP-MRD: Showing NP-Card for Cylindrol B (NP0003899)

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Record Information

Version

2.0

Created at

2020-12-09 01:26:58 UTC

Updated at

2021-07-15 16:47:41 UTC

NP-MRD ID

NP0003899

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Cylindrol B

Provided By

NPAtlas

Description

2,4-Dihydroxy-6-methyl-3-[(2E,4E)-3-methyl-5-[(1R,2R,6R)-1,2,6-trimethyl-3-oxocyclohexyl]penta-2,4-dien-1-yl]benzaldehyde belongs to the class of organic compounds known as hydroxybenzaldehydes. These are organic aromatic compounds containing a benzene ring carrying an aldehyde group and a hydroxyl group. Cylindrol B is found in Cylindrocarpon lucidum. Based on a literature review very few articles have been published on 2,4-dihydroxy-6-methyl-3-[(2E,4E)-3-methyl-5-[(1R,2R,6R)-1,2,6-trimethyl-3-oxocyclohexyl]penta-2,4-dien-1-yl]benzaldehyde.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117513D          

 57 58  0  0  0  0            999 V2000
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   -5.5707    1.9284   -0.2439 C   0  0  1  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652306242117513D          

 57 58  0  0  0  0            999 V2000
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   -0.9049    0.5258   -0.9853 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2220   -1.4693    0.9222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7418    1.6892    1.0721 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3345    2.4311    0.8528 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2162    2.2209   -0.5850 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7428   -0.5005   -1.0212 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8426   -0.3840   -3.1400 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5662   -1.0338   -2.1118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5034    0.7011   -2.7558 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2842    1.4391   -2.3132 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9662    2.3986   -1.6119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5037    3.0434   -0.0697 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6397    1.7370   -0.5349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6963   -0.8045    1.0876 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4673    0.3250    3.3552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0933   -0.6996    2.7473 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0181    1.1311    2.7139 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2535   -0.0169   -1.6185 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2351   -2.7456   -0.5092 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6811   -2.0919   -2.0788 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1003   -3.6455   -1.4432 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9219   -1.9927   -0.0692 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6920    1.2725    0.4555 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1826    0.8095    2.1023 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0788   -0.4065    1.1249 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9523    2.3109    1.5289 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3859    1.7037    0.4295 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
  2 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 23 26  2  0  0  0  0
 26 27  1  0  0  0  0
 13  5  1  0  0  0  0
 26 17  1  0  0  0  0
  1 28  1  0  0  0  0
  1 29  1  0  0  0  0
  1 30  1  0  0  0  0
  3 31  1  0  0  0  0
  4 32  1  0  0  0  0
  6 33  1  0  0  0  0
  6 34  1  0  0  0  0
  6 35  1  0  0  0  0
  7 36  1  1  0  0  0
  8 37  1  0  0  0  0
  8 38  1  0  0  0  0
  8 39  1  0  0  0  0
  9 40  1  0  0  0  0
  9 41  1  0  0  0  0
 10 42  1  0  0  0  0
 10 43  1  0  0  0  0
 13 44  1  6  0  0  0
 14 45  1  0  0  0  0
 14 46  1  0  0  0  0
 14 47  1  0  0  0  0
 15 48  1  0  0  0  0
 16 49  1  0  0  0  0
 16 50  1  0  0  0  0
 19 51  1  0  0  0  0
 20 52  1  0  0  0  0
 22 53  1  0  0  0  0
 22 54  1  0  0  0  0
 22 55  1  0  0  0  0
 24 56  1  0  0  0  0
 27 57  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0003899

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C(C(O[H])=C(C([H])=O)C(=C1[H])C([H])([H])[H])C([H])([H])C(\[H])=C(\C(\[H])=C(/[H])[C@]1(C([H])([H])[H])[C@]([H])(C(=O)C([H])([H])C([H])([H])[C@@]1([H])C([H])([H])[H])C([H])([H])[H])/C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C23H30O4/c1-14(10-11-23(5)16(3)7-9-20(25)17(23)4)6-8-18-21(26)12-15(2)19(13-24)22(18)27/h6,10-13,16-17,26-27H,7-9H2,1-5H3/b11-10+,14-6+/t16-,17+,23+/m1/s1

> <INCHI_KEY>
AQCKKGIVKOHRLM-HBFAXEOFSA-N

> <FORMULA>
C23H30O4

> <MOLECULAR_WEIGHT>
370.489

> <EXACT_MASS>
370.214409446

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
57

> <JCHEM_AVERAGE_POLARIZABILITY>
42.51783049715291

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2,4-dihydroxy-6-methyl-3-[(2E,4E)-3-methyl-5-[(1R,2R,6R)-1,2,6-trimethyl-3-oxocyclohexyl]penta-2,4-dien-1-yl]benzaldehyde

> <ALOGPS_LOGP>
4.94

> <JCHEM_LOGP>
6.050224202333332

> <ALOGPS_LOGS>
-4.64

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.074533334724093

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.325817983832008

> <JCHEM_PKA_STRONGEST_BASIC>
-5.749669188877324

> <JCHEM_POLAR_SURFACE_AREA>
74.6

> <JCHEM_REFRACTIVITY>
111.59639999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
8.57e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2,4-dihydroxy-6-methyl-3-[(2E,4E)-3-methyl-5-[(1R,2R,6R)-1,2,6-trimethyl-3-oxocyclohexyl]penta-2,4-dien-1-yl]benzaldehyde

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 57 58  0  0  0  0  0  0  0  0999 V2000
    0.1961   -2.4737    0.4692 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1826   -1.2379   -0.3250 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9786   -0.3838   -0.3549 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1041   -0.6003    0.3006 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2022    0.4011    0.1454 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.5893    1.7800    0.3468 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9456    0.2811   -1.1454 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1342   -0.1032   -2.3292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6763    1.5817   -1.3708 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5707    1.9284   -0.2439 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3281    1.1820    1.0006 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1190    1.3942    1.9294 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2469    0.2215    1.2355 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6708    0.2398    2.6117 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2629   -0.9367   -1.0163 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4627   -1.7731   -1.0267 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6819   -1.1876   -0.4950 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8528   -1.8970   -0.5194 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9049   -3.1769   -1.0521 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0317   -1.3680   -0.0145 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0424   -0.1115    0.5230 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3278    0.4190    1.0561 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8712    0.6327    0.5621 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9964    1.9581    1.1537 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0553    2.7554    1.2689 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7057    0.1005    0.0593 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5349    0.8166    0.0870 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1044   -2.4504    1.1301 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6508   -2.5962    1.1494 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2626   -3.3436   -0.2331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9049    0.5258   -0.9853 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2220   -1.4693    0.9222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7418    1.6892    1.0721 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3345    2.4311    0.8528 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2162    2.2209   -0.5850 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7428   -0.5005   -1.0212 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8426   -0.3840   -3.1400 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5662   -1.0338   -2.1118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5034    0.7011   -2.7558 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2842    1.4391   -2.3132 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9662    2.3986   -1.6119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5037    3.0434   -0.0697 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6397    1.7370   -0.5349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6963   -0.8045    1.0876 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4673    0.3250    3.3552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0933   -0.6996    2.7473 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0181    1.1311    2.7139 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2535   -0.0169   -1.6185 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2351   -2.7456   -0.5092 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6811   -2.0919   -2.0788 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1003   -3.6455   -1.4432 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9219   -1.9927   -0.0692 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6920    1.2725    0.4555 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1826    0.8095    2.1023 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0788   -0.4065    1.1249 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9523    2.3109    1.5289 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3859    1.7037    0.4295 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  5  4  1  6
  5  6  1  0
  5  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
  2 15  2  0
 15 16  1  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 18 20  1  0
 20 21  2  0
 21 22  1  0
 21 23  1  0
 23 24  1  0
 24 25  2  0
 23 26  2  0
 26 27  1  0
 13  5  1  0
 26 17  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  3 31  1  0
  4 32  1  0
  6 33  1  0
  6 34  1  0
  6 35  1  0
  7 36  1  1
  8 37  1  0
  8 38  1  0
  8 39  1  0
  9 40  1  0
  9 41  1  0
 10 42  1  0
 10 43  1  0
 13 44  1  6
 14 45  1  0
 14 46  1  0
 14 47  1  0
 15 48  1  0
 16 49  1  0
 16 50  1  0
 19 51  1  0
 20 52  1  0
 22 53  1  0
 22 54  1  0
 22 55  1  0
 24 56  1  0
 27 57  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       0.196  -2.474   0.469  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.183  -1.238  -0.325  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.979  -0.384  -0.355  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.104  -0.600   0.301  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.202   0.401   0.145  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.589   1.780   0.347  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.946   0.281  -1.145  0.00  0.00           C+0
HETATM    8  C   UNK     0      -3.134  -0.103  -2.329  0.00  0.00           C+0
HETATM    9  C   UNK     0      -4.676   1.582  -1.371  0.00  0.00           C+0
HETATM   10  C   UNK     0      -5.571   1.928  -0.244  0.00  0.00           C+0
HETATM   11  C   UNK     0      -5.328   1.182   1.001  0.00  0.00           C+0
HETATM   12  O   UNK     0      -6.119   1.394   1.929  0.00  0.00           O+0
HETATM   13  C   UNK     0      -4.247   0.222   1.236  0.00  0.00           C+0
HETATM   14  C   UNK     0      -3.671   0.240   2.612  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.263  -0.937  -1.016  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.463  -1.773  -1.027  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.682  -1.188  -0.495  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.853  -1.897  -0.519  0.00  0.00           C+0
HETATM   19  O   UNK     0       4.905  -3.177  -1.052  0.00  0.00           O+0
HETATM   20  C   UNK     0       6.032  -1.368  -0.015  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.042  -0.112   0.523  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.328   0.419   1.056  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.871   0.633   0.562  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.996   1.958   1.154  0.00  0.00           C+0
HETATM   25  O   UNK     0       4.055   2.755   1.269  0.00  0.00           O+0
HETATM   26  C   UNK     0       3.706   0.101   0.059  0.00  0.00           C+0
HETATM   27  O   UNK     0       2.535   0.817   0.087  0.00  0.00           O+0
HETATM   28  H   UNK     0       1.104  -2.450   1.130  0.00  0.00           H+0
HETATM   29  H   UNK     0      -0.651  -2.596   1.149  0.00  0.00           H+0
HETATM   30  H   UNK     0       0.263  -3.344  -0.233  0.00  0.00           H+0
HETATM   31  H   UNK     0      -0.905   0.526  -0.985  0.00  0.00           H+0
HETATM   32  H   UNK     0      -2.222  -1.469   0.922  0.00  0.00           H+0
HETATM   33  H   UNK     0      -1.742   1.689   1.072  0.00  0.00           H+0
HETATM   34  H   UNK     0      -3.334   2.431   0.853  0.00  0.00           H+0
HETATM   35  H   UNK     0      -2.216   2.221  -0.585  0.00  0.00           H+0
HETATM   36  H   UNK     0      -4.743  -0.500  -1.021  0.00  0.00           H+0
HETATM   37  H   UNK     0      -3.843  -0.384  -3.140  0.00  0.00           H+0
HETATM   38  H   UNK     0      -2.566  -1.034  -2.112  0.00  0.00           H+0
HETATM   39  H   UNK     0      -2.503   0.701  -2.756  0.00  0.00           H+0
HETATM   40  H   UNK     0      -5.284   1.439  -2.313  0.00  0.00           H+0
HETATM   41  H   UNK     0      -3.966   2.399  -1.612  0.00  0.00           H+0
HETATM   42  H   UNK     0      -5.504   3.043  -0.070  0.00  0.00           H+0
HETATM   43  H   UNK     0      -6.640   1.737  -0.535  0.00  0.00           H+0
HETATM   44  H   UNK     0      -4.696  -0.805   1.088  0.00  0.00           H+0
HETATM   45  H   UNK     0      -4.467   0.325   3.355  0.00  0.00           H+0
HETATM   46  H   UNK     0      -3.093  -0.700   2.747  0.00  0.00           H+0
HETATM   47  H   UNK     0      -3.018   1.131   2.714  0.00  0.00           H+0
HETATM   48  H   UNK     0       1.254  -0.017  -1.619  0.00  0.00           H+0
HETATM   49  H   UNK     0       2.235  -2.746  -0.509  0.00  0.00           H+0
HETATM   50  H   UNK     0       2.681  -2.092  -2.079  0.00  0.00           H+0
HETATM   51  H   UNK     0       4.100  -3.646  -1.443  0.00  0.00           H+0
HETATM   52  H   UNK     0       6.922  -1.993  -0.069  0.00  0.00           H+0
HETATM   53  H   UNK     0       7.692   1.272   0.456  0.00  0.00           H+0
HETATM   54  H   UNK     0       7.183   0.810   2.102  0.00  0.00           H+0
HETATM   55  H   UNK     0       8.079  -0.407   1.125  0.00  0.00           H+0
HETATM   56  H   UNK     0       5.952   2.311   1.529  0.00  0.00           H+0
HETATM   57  H   UNK     0       2.386   1.704   0.430  0.00  0.00           H+0
CONECT    1    2   28   29   30                                             
CONECT    2    1    3   15                                                  
CONECT    3    2    4   31                                                  
CONECT    4    3    5   32                                                  
CONECT    5    4    6    7   13                                             
CONECT    6    5   33   34   35                                             
CONECT    7    5    8    9   36                                             
CONECT    8    7   37   38   39                                             
CONECT    9    7   10   40   41                                             
CONECT   10    9   11   42   43                                             
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14    5   44                                             
CONECT   14   13   45   46   47                                             
CONECT   15    2   16   48                                                  
CONECT   16   15   17   49   50                                             
CONECT   17   16   18   26                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18   51                                                       
CONECT   20   18   21   52                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21   53   54   55                                             
CONECT   23   21   24   26                                                  
CONECT   24   23   25   56                                                  
CONECT   25   24                                                            
CONECT   26   23   27   17                                                  
CONECT   27   26   57                                                       
CONECT   28    1                                                            
CONECT   29    1                                                            
CONECT   30    1                                                            
CONECT   31    3                                                            
CONECT   32    4                                                            
CONECT   33    6                                                            
CONECT   34    6                                                            
CONECT   35    6                                                            
CONECT   36    7                                                            
CONECT   37    8                                                            
CONECT   38    8                                                            
CONECT   39    8                                                            
CONECT   40    9                                                            
CONECT   41    9                                                            
CONECT   42   10                                                            
CONECT   43   10                                                            
CONECT   44   13                                                            
CONECT   45   14                                                            
CONECT   46   14                                                            
CONECT   47   14                                                            
CONECT   48   15                                                            
CONECT   49   16                                                            
CONECT   50   16                                                            
CONECT   51   19                                                            
CONECT   52   20                                                            
CONECT   53   22                                                            
CONECT   54   22                                                            
CONECT   55   22                                                            
CONECT   56   24                                                            
CONECT   57   27                                                            
MASTER        0    0    0    0    0    0    0    0   57    0  116    0
END

RDKit          3D

57 58  0  0  0  0  0  0  0  0999 V2000
    0.1961   -2.4737    0.4692 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1826   -1.2379   -0.3250 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9786   -0.3838   -0.3549 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1041   -0.6003    0.3006 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2022    0.4011    0.1454 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.5893    1.7800    0.3468 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9456    0.2811   -1.1454 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1342   -0.1032   -2.3292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6763    1.5817   -1.3708 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5707    1.9284   -0.2439 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3281    1.1820    1.0006 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1190    1.3942    1.9294 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2469    0.2215    1.2355 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6708    0.2398    2.6117 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2629   -0.9367   -1.0163 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4627   -1.7731   -1.0267 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6819   -1.1876   -0.4950 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8528   -1.8970   -0.5194 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9049   -3.1769   -1.0521 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0317   -1.3680   -0.0145 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0424   -0.1115    0.5230 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3278    0.4190    1.0561 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8712    0.6327    0.5621 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9964    1.9581    1.1537 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0553    2.7554    1.2689 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7057    0.1005    0.0593 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5349    0.8166    0.0870 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1044   -2.4504    1.1301 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6508   -2.5962    1.1494 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2626   -3.3436   -0.2331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9049    0.5258   -0.9853 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2220   -1.4693    0.9222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7418    1.6892    1.0721 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3345    2.4311    0.8528 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2162    2.2209   -0.5850 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7428   -0.5005   -1.0212 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8426   -0.3840   -3.1400 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5662   -1.0338   -2.1118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5034    0.7011   -2.7558 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2842    1.4391   -2.3132 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9662    2.3986   -1.6119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5037    3.0434   -0.0697 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6397    1.7370   -0.5349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6963   -0.8045    1.0876 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4673    0.3250    3.3552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0933   -0.6996    2.7473 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0181    1.1311    2.7139 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2535   -0.0169   -1.6185 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2351   -2.7456   -0.5092 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6811   -2.0919   -2.0788 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1003   -3.6455   -1.4432 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9219   -1.9927   -0.0692 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6920    1.2725    0.4555 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1826    0.8095    2.1023 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0788   -0.4065    1.1249 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9523    2.3109    1.5289 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3859    1.7037    0.4295 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  5  4  1  6
  5  6  1  0
  5  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
  2 15  2  0
 15 16  1  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 18 20  1  0
 20 21  2  0
 21 22  1  0
 21 23  1  0
 23 24  1  0
 24 25  2  0
 23 26  2  0
 26 27  1  0
 13  5  1  0
 26 17  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  3 31  1  0
  4 32  1  0
  6 33  1  0
  6 34  1  0
  6 35  1  0
  7 36  1  1
  8 37  1  0
  8 38  1  0
  8 39  1  0
  9 40  1  0
  9 41  1  0
 10 42  1  0
 10 43  1  0
 13 44  1  6
 14 45  1  0
 14 46  1  0
 14 47  1  0
 15 48  1  0
 16 49  1  0
 16 50  1  0
 19 51  1  0
 20 52  1  0
 22 53  1  0
 22 54  1  0
 22 55  1  0
 24 56  1  0
 27 57  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₃H₃₀O₄

Average Mass

370.4890 Da

Monoisotopic Mass

370.21441 Da

IUPAC Name

2,4-dihydroxy-6-methyl-3-[(2E,4E)-3-methyl-5-[(1R,2R,6R)-1,2,6-trimethyl-3-oxocyclohexyl]penta-2,4-dien-1-yl]benzaldehyde

Traditional Name

2,4-dihydroxy-6-methyl-3-[(2E,4E)-3-methyl-5-[(1R,2R,6R)-1,2,6-trimethyl-3-oxocyclohexyl]penta-2,4-dien-1-yl]benzaldehyde

CAS Registry Number

Not Available

SMILES

C[C@@H]1CCC(=O)[C@H](C)[C@@]1(C)\C=C\C(\C)=C\CC1=C(O)C=C(C)C(C=O)=C1O

InChI Identifier

InChI=1S/C23H30O4/c1-14(10-11-23(5)16(3)7-9-20(25)17(23)4)6-8-18-21(26)12-15(2)19(13-24)22(18)27/h6,10-13,16-17,26-27H,7-9H2,1-5H3/b11-10+,14-6+/t16-,17+,23+/m1/s1

InChI Key

AQCKKGIVKOHRLM-HBFAXEOFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cylindrocarpon lucidum	NPAtlas	11667727

Species Where Detected

Species Name	Source	Reference
Acremonium sp.	KNApSAcK Database	22123792

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydroxybenzaldehydes. These are organic aromatic compounds containing a benzene ring carrying an aldehyde group and a hydroxyl group.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbonyl compounds

Direct Parent

Hydroxybenzaldehydes

Alternative Parents

Substituents

Hydroxybenzaldehyde
Benzoyl
M-cresol
Resorcinol
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Toluene
Phenol
Monocyclic benzene moiety
Benzenoid
Vinylogous acid
Ketone
Cyclic ketone
Hydrocarbon derivative
Organic oxide
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.94	ALOGPS
logP	6.05	ChemAxon
logS	-4.6	ALOGPS
pKa (Strongest Acidic)	7.33	ChemAxon
pKa (Strongest Basic)	-5.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	74.6 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	111.6 m³·mol⁻¹	ChemAxon
Polarizability	42.52 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA016889

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8083063

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

9907411

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Cylindrol B (NP0003899)

MOL for NP0003899 (Cylindrol B)

3D MOL for NP0003899 (Cylindrol B)

3D SDF for NP0003899 (Cylindrol B)

3D-SDF for NP0003899 (Cylindrol B)

PDB for NP0003899 (Cylindrol B)

3D PDB for NP0003899 (Cylindrol B)

SMILES for NP0003899 (Cylindrol B)

INCHI for NP0003899 (Cylindrol B)

Structure for NP0003899 (Cylindrol B)

3D Structure for NP0003899 (Cylindrol B)