NP-MRD: Showing NP-Card for Epothilone C6 (NP0003748)

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Record Information

Version

1.0

Created at

2020-12-09 00:54:41 UTC

Updated at

2021-07-15 16:47:16 UTC

NP-MRD ID

NP0003748

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Epothilone C6

Provided By

NPAtlas

Description

Epothilone C6 is found in Sorangium cellulosum. It was first documented in 2001 (PMID: 11473410).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117493D          

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M  END

     RDKit          3D

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M  END


  Mrv1652306242117493D          

 70 71  0  0  0  0            999 V2000
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    7.7273    1.3662    0.8429 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7621    2.4606    0.7666 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4214    1.5061    0.7071 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9639   -0.0701   -0.1558 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1923   -1.2453    0.3967 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8211   -2.1533   -0.6912 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0995   -3.2531   -0.5888 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.3891    1.8281    0.8293 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7789    1.5816   -1.4356 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -2.8351    3.0982   -1.6770 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.9339    1.2488   -1.9468 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.2439   -2.4848    3.1677 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.6239   -1.3316    0.9931 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.2089    3.3903   -2.5220 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9033    3.4138   -1.7885 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.4467   -0.0162   -1.9669 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.3608    2.7267   -1.0910 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
  2 10  1  0  0  0  0
 10 11  1  0  0  0  0
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 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  6  0  0  0
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 28 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 31 33  1  0  0  0  0
  9  4  1  0  0  0  0
 33 10  1  0  0  0  0
  1 34  1  0  0  0  0
  1 35  1  0  0  0  0
  1 36  1  0  0  0  0
  3 37  1  0  0  0  0
  5 38  1  0  0  0  0
  8 39  1  0  0  0  0
  8 40  1  0  0  0  0
  8 41  1  0  0  0  0
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 22 60  1  0  0  0  0
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 28 67  1  6  0  0  0
 29 68  1  0  0  0  0
 30 69  1  0  0  0  0
 30 70  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0003748

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@]1([H])[C@]([H])(C(=O)C(C([H])([H])[H])(C([H])([H])[H])[C@@]([H])(O[H])C([H])([H])C(=O)O[C@]([H])(C(=C(/[H])C2=C([H])SC(=N2)C([H])([H])[H])\C([H])([H])[H])C([H])([H])\C([H])=C(\[H])/C(/[H])=C([H])\C([H])([H])[C@]1([H])C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C26H37NO5S/c1-16-11-9-7-8-10-12-21(17(2)13-20-15-33-19(4)27-20)32-23(29)14-22(28)26(5,6)25(31)18(3)24(16)30/h7-10,13,15-16,18,21-22,24,28,30H,11-12,14H2,1-6H3/b9-7-,10-8-,17-13+/t16-,18+,21-,22-,24-/m0/s1

> <INCHI_KEY>
ROFAAPRTXVOLLR-JYFIKWBOSA-N

> <FORMULA>
C26H37NO5S

> <MOLECULAR_WEIGHT>
475.64

> <EXACT_MASS>
475.239244469

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
70

> <JCHEM_AVERAGE_POLARIZABILITY>
53.06062735721742

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(4S,7R,8S,9S,11Z,13Z,16S)-4,8-dihydroxy-5,5,7,9-tetramethyl-16-[(1E)-1-(2-methyl-1,3-thiazol-4-yl)prop-1-en-2-yl]-1-oxacyclohexadeca-11,13-diene-2,6-dione

> <ALOGPS_LOGP>
4.63

> <JCHEM_LOGP>
4.491026344333336

> <ALOGPS_LOGS>
-5.25

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.72107625054236

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.083014747557566

> <JCHEM_PKA_STRONGEST_BASIC>
2.7263000298711684

> <JCHEM_POLAR_SURFACE_AREA>
96.72000000000001

> <JCHEM_REFRACTIVITY>
132.8777

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.70e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(4S,7R,8S,9S,11Z,13Z,16S)-4,8-dihydroxy-5,5,7,9-tetramethyl-16-[(1E)-1-(2-methyl-1,3-thiazol-4-yl)prop-1-en-2-yl]-1-oxacyclohexadeca-11,13-diene-2,6-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 70 71  0  0  0  0  0  0  0  0999 V2000
    4.0940   -1.4010   -0.7457 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.6451    0.4688    0.7965 C   0  0  0  0  0  0  0  0  0  0  0  0
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    7.7273    1.3662    0.8429 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7621    2.4606    0.7666 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4214    1.5061    0.7071 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9639   -0.0701   -0.1558 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1923   -1.2453    0.3967 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8211   -2.1533   -0.6912 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0995   -3.2531   -0.5888 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.3769    1.3095    0.6092 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0628    1.3070   -0.0185 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.0730    2.3536    0.7912 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.8073   -0.0931   -2.4161 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.7639    0.8832   -3.7704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2243    1.1754   -0.1565 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3608    2.7267   -1.0910 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  2  0
  2 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 19 21  1  0
 21 22  1  0
 21 23  1  0
 23 24  2  0
 23 25  1  0
 25 26  1  6
 25 27  1  0
 25 28  1  0
 28 29  1  0
 28 30  1  0
 30 31  1  0
 31 32  2  0
 31 33  1  0
  9  4  1  0
 33 10  1  0
  1 34  1  0
  1 35  1  0
  1 36  1  0
  3 37  1  0
  5 38  1  0
  8 39  1  0
  8 40  1  0
  8 41  1  0
 10 42  1  1
 11 43  1  0
 11 44  1  0
 12 45  1  0
 13 46  1  0
 14 47  1  0
 15 48  1  0
 16 49  1  0
 16 50  1  0
 17 51  1  1
 18 52  1  0
 18 53  1  0
 18 54  1  0
 19 55  1  1
 20 56  1  0
 21 57  1  6
 22 58  1  0
 22 59  1  0
 22 60  1  0
 26 61  1  0
 26 62  1  0
 26 63  1  0
 27 64  1  0
 27 65  1  0
 27 66  1  0
 28 67  1  6
 29 68  1  0
 30 69  1  0
 30 70  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       4.094  -1.401  -0.746  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.448  -0.264  -0.058  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.172   0.576   0.639  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.645   0.469   0.797  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.237  -0.744   1.033  0.00  0.00           C+0
HETATM    6  S   UNK     0       7.896  -0.308   1.112  0.00  0.00           S+0
HETATM    7  C   UNK     0       7.727   1.366   0.843  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.762   2.461   0.767  0.00  0.00           C+0
HETATM    9  N   UNK     0       6.421   1.506   0.707  0.00  0.00           N+0
HETATM   10  C   UNK     0       1.964  -0.070  -0.156  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.192  -1.245   0.397  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.821  -2.153  -0.691  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.100  -3.253  -0.589  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.448  -3.728   0.653  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.481  -3.145   1.224  0.00  0.00           C+0
HETATM   16  C   UNK     0      -2.221  -1.968   0.715  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.552  -0.953   1.769  0.00  0.00           C+0
HETATM   18  C   UNK     0      -2.531  -1.644   3.140  0.00  0.00           C+0
HETATM   19  C   UNK     0      -3.933  -0.433   1.567  0.00  0.00           C+0
HETATM   20  O   UNK     0      -4.790  -1.557   1.481  0.00  0.00           O+0
HETATM   21  C   UNK     0      -4.160   0.404   0.360  0.00  0.00           C+0
HETATM   22  C   UNK     0      -5.377   1.310   0.609  0.00  0.00           C+0
HETATM   23  C   UNK     0      -3.063   1.307  -0.019  0.00  0.00           C+0
HETATM   24  O   UNK     0      -2.389   1.828   0.829  0.00  0.00           O+0
HETATM   25  C   UNK     0      -2.779   1.582  -1.436  0.00  0.00           C+0
HETATM   26  C   UNK     0      -3.832   1.001  -2.370  0.00  0.00           C+0
HETATM   27  C   UNK     0      -2.835   3.098  -1.677  0.00  0.00           C+0
HETATM   28  C   UNK     0      -1.456   1.074  -1.924  0.00  0.00           C+0
HETATM   29  O   UNK     0      -1.313   1.535  -3.245  0.00  0.00           O+0
HETATM   30  C   UNK     0      -0.269   1.624  -1.163  0.00  0.00           C+0
HETATM   31  C   UNK     0       0.934   1.249  -1.947  0.00  0.00           C+0
HETATM   32  O   UNK     0       1.200   1.923  -2.972  0.00  0.00           O+0
HETATM   33  O   UNK     0       1.694   0.182  -1.509  0.00  0.00           O+0
HETATM   34  H   UNK     0       3.959  -2.374  -0.249  0.00  0.00           H+0
HETATM   35  H   UNK     0       3.521  -1.516  -1.723  0.00  0.00           H+0
HETATM   36  H   UNK     0       5.127  -1.201  -1.086  0.00  0.00           H+0
HETATM   37  H   UNK     0       3.636   1.403   1.127  0.00  0.00           H+0
HETATM   38  H   UNK     0       5.766  -1.737   1.147  0.00  0.00           H+0
HETATM   39  H   UNK     0       8.539   3.184  -0.018  0.00  0.00           H+0
HETATM   40  H   UNK     0       8.760   2.947   1.765  0.00  0.00           H+0
HETATM   41  H   UNK     0       9.751   1.969   0.617  0.00  0.00           H+0
HETATM   42  H   UNK     0       1.685   0.799   0.458  0.00  0.00           H+0
HETATM   43  H   UNK     0       1.923  -1.739   1.118  0.00  0.00           H+0
HETATM   44  H   UNK     0       0.363  -0.933   1.042  0.00  0.00           H+0
HETATM   45  H   UNK     0       1.166  -1.911  -1.718  0.00  0.00           H+0
HETATM   46  H   UNK     0      -0.042  -3.855  -1.523  0.00  0.00           H+0
HETATM   47  H   UNK     0      -0.013  -4.647   1.141  0.00  0.00           H+0
HETATM   48  H   UNK     0      -1.820  -3.590   2.186  0.00  0.00           H+0
HETATM   49  H   UNK     0      -3.187  -2.393   0.294  0.00  0.00           H+0
HETATM   50  H   UNK     0      -1.655  -1.477  -0.086  0.00  0.00           H+0
HETATM   51  H   UNK     0      -1.773  -0.197   1.799  0.00  0.00           H+0
HETATM   52  H   UNK     0      -2.887  -0.906   3.905  0.00  0.00           H+0
HETATM   53  H   UNK     0      -3.244  -2.485   3.168  0.00  0.00           H+0
HETATM   54  H   UNK     0      -1.516  -1.942   3.433  0.00  0.00           H+0
HETATM   55  H   UNK     0      -4.278   0.106   2.476  0.00  0.00           H+0
HETATM   56  H   UNK     0      -5.624  -1.332   0.993  0.00  0.00           H+0
HETATM   57  H   UNK     0      -4.473  -0.245  -0.500  0.00  0.00           H+0
HETATM   58  H   UNK     0      -6.112   1.266  -0.195  0.00  0.00           H+0
HETATM   59  H   UNK     0      -5.893   0.978   1.550  0.00  0.00           H+0
HETATM   60  H   UNK     0      -5.073   2.354   0.791  0.00  0.00           H+0
HETATM   61  H   UNK     0      -3.516   1.344  -3.401  0.00  0.00           H+0
HETATM   62  H   UNK     0      -3.807  -0.093  -2.416  0.00  0.00           H+0
HETATM   63  H   UNK     0      -4.809   1.454  -2.198  0.00  0.00           H+0
HETATM   64  H   UNK     0      -2.209   3.390  -2.522  0.00  0.00           H+0
HETATM   65  H   UNK     0      -3.903   3.414  -1.789  0.00  0.00           H+0
HETATM   66  H   UNK     0      -2.446   3.566  -0.742  0.00  0.00           H+0
HETATM   67  H   UNK     0      -1.447  -0.016  -1.967  0.00  0.00           H+0
HETATM   68  H   UNK     0      -0.764   0.883  -3.770  0.00  0.00           H+0
HETATM   69  H   UNK     0      -0.224   1.175  -0.157  0.00  0.00           H+0
HETATM   70  H   UNK     0      -0.361   2.727  -1.091  0.00  0.00           H+0
CONECT    1    2   34   35   36                                             
CONECT    2    1    3   10                                                  
CONECT    3    2    4   37                                                  
CONECT    4    3    5    9                                                  
CONECT    5    4    6   38                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7   39   40   41                                             
CONECT    9    7    4                                                       
CONECT   10    2   11   33   42                                             
CONECT   11   10   12   43   44                                             
CONECT   12   11   13   45                                                  
CONECT   13   12   14   46                                                  
CONECT   14   13   15   47                                                  
CONECT   15   14   16   48                                                  
CONECT   16   15   17   49   50                                             
CONECT   17   16   18   19   51                                             
CONECT   18   17   52   53   54                                             
CONECT   19   17   20   21   55                                             
CONECT   20   19   56                                                       
CONECT   21   19   22   23   57                                             
CONECT   22   21   58   59   60                                             
CONECT   23   21   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   27   28                                             
CONECT   26   25   61   62   63                                             
CONECT   27   25   64   65   66                                             
CONECT   28   25   29   30   67                                             
CONECT   29   28   68                                                       
CONECT   30   28   31   69   70                                             
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   10                                                       
CONECT   34    1                                                            
CONECT   35    1                                                            
CONECT   36    1                                                            
CONECT   37    3                                                            
CONECT   38    5                                                            
CONECT   39    8                                                            
CONECT   40    8                                                            
CONECT   41    8                                                            
CONECT   42   10                                                            
CONECT   43   11                                                            
CONECT   44   11                                                            
CONECT   45   12                                                            
CONECT   46   13                                                            
CONECT   47   14                                                            
CONECT   48   15                                                            
CONECT   49   16                                                            
CONECT   50   16                                                            
CONECT   51   17                                                            
CONECT   52   18                                                            
CONECT   53   18                                                            
CONECT   54   18                                                            
CONECT   55   19                                                            
CONECT   56   20                                                            
CONECT   57   21                                                            
CONECT   58   22                                                            
CONECT   59   22                                                            
CONECT   60   22                                                            
CONECT   61   26                                                            
CONECT   62   26                                                            
CONECT   63   26                                                            
CONECT   64   27                                                            
CONECT   65   27                                                            
CONECT   66   27                                                            
CONECT   67   28                                                            
CONECT   68   29                                                            
CONECT   69   30                                                            
CONECT   70   30                                                            
MASTER        0    0    0    0    0    0    0    0   70    0  142    0
END

RDKit          3D

70 71  0  0  0  0  0  0  0  0999 V2000
    4.0940   -1.4010   -0.7457 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4477   -0.2640   -0.0575 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1720    0.5764    0.6388 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6451    0.4688    0.7965 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2369   -0.7444    1.0331 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8961   -0.3079    1.1122 S   0  0  0  0  0  0  0  0  0  0  0  0
    7.7273    1.3662    0.8429 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7621    2.4606    0.7666 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4214    1.5061    0.7071 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9639   -0.0701   -0.1558 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1923   -1.2453    0.3967 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8211   -2.1533   -0.6912 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0995   -3.2531   -0.5888 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4477   -3.7280    0.6528 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4814   -3.1448    1.2244 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2211   -1.9679    0.7150 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.5308   -1.6439    3.1401 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.7898   -1.5571    1.4807 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1604    0.4038    0.3602 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.3769    1.3095    0.6092 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0628    1.3070   -0.0185 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3891    1.8281    0.8293 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7789    1.5816   -1.4356 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -2.8351    3.0982   -1.6770 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.3130    1.5351   -3.2448 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.9339    1.2488   -1.9468 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1999    1.9228   -2.9721 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6944    0.1822   -1.5090 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9589   -2.3738   -0.2487 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5210   -1.5161   -1.7226 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1272   -1.2008   -1.0861 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6363    1.4025    1.1265 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7657   -1.7374    1.1473 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5388    3.1839   -0.0183 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7604    2.9474    1.7654 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7513    1.9686    0.6167 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6848    0.7994    0.4576 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9228   -1.7386    1.1178 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3629   -0.9333    1.0421 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1662   -1.9105   -1.7185 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0415   -3.8552   -1.5231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0134   -4.6468    1.1411 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8196   -3.5895    2.1861 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.4734   -0.2449   -0.4997 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1122    1.2663   -0.1953 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8928    0.9780    1.5503 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0730    2.3536    0.7912 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.8073   -0.0931   -2.4161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8086    1.4536   -2.1979 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2089    3.3903   -2.5220 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9033    3.4138   -1.7885 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4461    3.5661   -0.7419 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4467   -0.0162   -1.9669 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7639    0.8832   -3.7704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2243    1.1754   -0.1565 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3608    2.7267   -1.0910 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  2  0
  2 10  1  0
 10 11  1  0
 11 12  1  0
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 13 14  1  0
 14 15  2  0
 15 16  1  0
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 17 19  1  0
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 19 21  1  0
 21 22  1  0
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 23 24  2  0
 23 25  1  0
 25 26  1  6
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 28 29  1  0
 28 30  1  0
 30 31  1  0
 31 32  2  0
 31 33  1  0
  9  4  1  0
 33 10  1  0
  1 34  1  0
  1 35  1  0
  1 36  1  0
  3 37  1  0
  5 38  1  0
  8 39  1  0
  8 40  1  0
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 20 56  1  0
 21 57  1  6
 22 58  1  0
 22 59  1  0
 22 60  1  0
 26 61  1  0
 26 62  1  0
 26 63  1  0
 27 64  1  0
 27 65  1  0
 27 66  1  0
 28 67  1  6
 29 68  1  0
 30 69  1  0
 30 70  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₆H₃₇NO₅S

Average Mass

475.6400 Da

Monoisotopic Mass

475.23924 Da

IUPAC Name

(4S,7R,8S,9S,11Z,13Z,16S)-4,8-dihydroxy-5,5,7,9-tetramethyl-16-[(1E)-1-(2-methyl-1,3-thiazol-4-yl)prop-1-en-2-yl]-1-oxacyclohexadeca-11,13-diene-2,6-dione

Traditional Name

(4S,7R,8S,9S,11Z,13Z,16S)-4,8-dihydroxy-5,5,7,9-tetramethyl-16-[(1E)-1-(2-methyl-1,3-thiazol-4-yl)prop-1-en-2-yl]-1-oxacyclohexadeca-11,13-diene-2,6-dione

CAS Registry Number

Not Available

SMILES

CC1C\C=C/C=C\C[C@H](OC(=O)C[C@H](O)C(C)(C)C(=O)[C@H](C)[C@H]1O)C(\C)=C\C1=CSC(C)=N1

InChI Identifier

InChI=1S/C26H37NO5S/c1-16-11-9-7-8-10-12-21(17(2)13-20-15-33-19(4)27-20)32-23(29)14-22(28)26(5,6)25(31)18(3)24(16)30/h7-10,13,15-16,18,21-22,24,28,30H,11-12,14H2,1-6H3/b9-7-,10-8-,17-13+/t16?,18-,21+,22+,24+/m1/s1

InChI Key

ROFAAPRTXVOLLR-JYFIKWBOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Sorangium cellulosum	NPAtlas	11473410

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.63	ALOGPS
logP	4.49	ChemAxon
logS	-5.2	ALOGPS
pKa (Strongest Acidic)	14.08	ChemAxon
pKa (Strongest Basic)	2.73	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	96.72 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	132.88 m³·mol⁻¹	ChemAxon
Polarizability	53.06 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Hardt IH, Steinmetz H, Gerth K, Sasse F, Reichenbach H, Hofle G: New natural epothilones from Sorangium cellulosum, strains So ce90/B2 and So ce90/D13: isolation, structure elucidation, and SAR studies. J Nat Prod. 2001 Jul;64(7):847-56. doi: 10.1021/np000629f. [PubMed:11473410 ]

Showing NP-Card for Epothilone C6 (NP0003748)

MOL for NP0003748 (Epothilone C6)

3D MOL for NP0003748 (Epothilone C6)

3D SDF for NP0003748 (Epothilone C6)

3D-SDF for NP0003748 (Epothilone C6)

PDB for NP0003748 (Epothilone C6)

3D PDB for NP0003748 (Epothilone C6)

SMILES for NP0003748 (Epothilone C6)

INCHI for NP0003748 (Epothilone C6)

Structure for NP0003748 (Epothilone C6)

3D Structure for NP0003748 (Epothilone C6)